PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013850.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 350aa MW: 39490.4 Da PI: 8.0375

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013850.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d + ++G+g +W + +++ g++R++k+c++rw++yl Cse_sc013850.1_g010.1 14 KGPWSPEEDAKLKDFIDKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.7	9.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + + G++ W+ Ia ++ gRt++++k++w++ Cse_sc013850.1_g010.1 69 GEFTDEEDRIICGLYANIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKDFID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDEEDRIIC GLYANIGSRW SIIAGQLPGR TDNDIKNYWN TKLRKKLMAM 120 LPSFQKKPSI FPSMPLQSPQ LFDHYHYKQE SFLNATSSLY NYNPNFMNAG NNINSLLTTS 180 NLVQNNMNVS SLYSPSIPSQ PPLSNPLLGT ISNNNSFLGF QDDYYPEVKE RMLMFGGGSE 240 MSTTFSSSEG GSASCISQSQ ISYKKDYLGV KQEDQFALEG YGFMTNYSNY LDQKSKEYFK 300 NLENVKEVID INNNRSSVNI HSYLMNDDEN KTAHIITTDG CLSTMIDGSN

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKDFID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDRIIC GLYANIGSRW SIIAGQLPGR TDNDIKNYWN TKLRKKLMAM  120
LPSFQKKPSI FPSMPLQSPQ LFDHYHYKQE SFLNATSSLY NYNPNFMNAG NNINSLLTTS  180
NLVQNNMNVS SLYSPSIPSQ PPLSNPLLGT ISNNNSFLGF QDDYYPEVKE RMLMFGGGSE  240
MSTTFSSSEG GSASCISQSQ ISYKKDYLGV KQEDQFALEG YGFMTNYSNY LDQKSKEYFK  300
NLENVKEVID INNNRSSVNI HSYLMNDDEN KTAHIITTDG CLSTMIDGSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-76	MYB family protein