PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013835.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 922aa MW: 104909 Da PI: 9.5439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013835.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.4e-12	408	480	1	71
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 ++Y++ Ak++GF+vr +++ks +++++ + fvCskeg++ k +++++ + +++rt+Cka ++vk Cse_sc013835.1_g030.1 408 EYYKACAKKTGFEVRLGQQYKSkkNKDKNLDLKYFVCSKEGTNPAPKVGAKSNNIKYQSKRTDCKAVFHVKDY 480 69*****************9444456677899******99999999999*************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence
MWTHYFSLVF QFGYPKFWIT VLYIDYLNIY NFRKQLVFNH LDPIAVGVSI LICVLASLSV 60 KGSSKFNSVT TILYMTLMAF MIVAGATKAN TAYFTPFAPF GIRGVLKASS VLFFAYVGFD 120 GVATLGEETK NPARDIPICL VGSMMTVITI YSVLATVLCL MQPFSQIDRD APFTIAFQAA 180 GMNWAKYIVA LGALMGMTAV LLAIIIGQVR YFTHIARTHL APPILAVIHK NRGTPMNATI 240 IMTAANCLVA FFTSLDILAN LLSISTLFIF LLVAIGLLLA SETILCNRRN INVKFWVWYA 300 ITGGVWFLAT LGLQLMVKQA RKPKLWGVPL VPWLPSASVG INVFIMGSID GASFLRFLGW 360 TDIDYEPVPY FVGIVSEEAG QKLWVPDIPA GEKPAYGMMY HSLEQAYEYY KACAKKTGFE 420 VRLGQQYKSK KNKDKNLDLK YFVCSKEGTN PAPKVGAKSN NIKYQSKRTD CKAVFHVKDY 480 EFIGASSVDC KSYRRDVLDF IGKNDAHMLV EMLMSKKDFL PNFSFEYETA KDPTFKRRIS 540 DIAWTDRIEP EEFEDLWERL LVDFDLKSHK WLSDMYNLRH KWIPAYYRDE LMAGLMRTSS 600 RSESENNAYG RLTSIDLTLW EFYKHFDSVV GCQRFAQRKN DHDSRYTAPD MHTELELEKE 660 ASELYTRSIF FNVQTEIYAS VILCVSVLCK PAEDFYECSY KRFESYGLLC PHIFYVFRLS 720 KVKKFPKKYV LRRWTKDSLP PPSVIQATGD SPDMILREIF ISVEYCVNCY ANDPELLQKF 780 RDHQVQIMAK ADADVPIPKK TNKRDRLASI LGVSQPEETI VYVPKQVSTK GSRKRIKSSV 840 ERSVNPSGKR RKNCRFCKCS MKDHDQAKCN AIRAQIVAKK ASDNAAIKES KQKARLAAKK 900 LKLSEKNACV SSNGVWNRRL EL

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence

MWTHYFSLVF QFGYPKFWIT VLYIDYLNIY NFRKQLVFNH LDPIAVGVSI LICVLASLSV  60
KGSSKFNSVT TILYMTLMAF MIVAGATKAN TAYFTPFAPF GIRGVLKASS VLFFAYVGFD  120
GVATLGEETK NPARDIPICL VGSMMTVITI YSVLATVLCL MQPFSQIDRD APFTIAFQAA  180
GMNWAKYIVA LGALMGMTAV LLAIIIGQVR YFTHIARTHL APPILAVIHK NRGTPMNATI  240
IMTAANCLVA FFTSLDILAN LLSISTLFIF LLVAIGLLLA SETILCNRRN INVKFWVWYA  300
ITGGVWFLAT LGLQLMVKQA RKPKLWGVPL VPWLPSASVG INVFIMGSID GASFLRFLGW  360
TDIDYEPVPY FVGIVSEEAG QKLWVPDIPA GEKPAYGMMY HSLEQAYEYY KACAKKTGFE  420
VRLGQQYKSK KNKDKNLDLK YFVCSKEGTN PAPKVGAKSN NIKYQSKRTD CKAVFHVKDY  480
EFIGASSVDC KSYRRDVLDF IGKNDAHMLV EMLMSKKDFL PNFSFEYETA KDPTFKRRIS  540
DIAWTDRIEP EEFEDLWERL LVDFDLKSHK WLSDMYNLRH KWIPAYYRDE LMAGLMRTSS  600
RSESENNAYG RLTSIDLTLW EFYKHFDSVV GCQRFAQRKN DHDSRYTAPD MHTELELEKE  660
ASELYTRSIF FNVQTEIYAS VILCVSVLCK PAEDFYECSY KRFESYGLLC PHIFYVFRLS  720
KVKKFPKKYV LRRWTKDSLP PPSVIQATGD SPDMILREIF ISVEYCVNCY ANDPELLQKF  780
RDHQVQIMAK ADADVPIPKK TNKRDRLASI LGVSQPEETI VYVPKQVSTK GSRKRIKSSV  840
ERSVNPSGKR RKNCRFCKCS MKDHDQAKCN AIRAQIVAKK ASDNAAIKES KQKARLAAKK  900
LKLSEKNACV SSNGVWNRRL EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	798	804	PKKTNKR
2	833	852	RKRIKSSVERSVNPSGKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-25	FAR1 family protein