PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc013652.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 308aa MW: 32848.2 Da PI: 9.8833 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + C++Gd+C++aHg+ Cse_sc013652.1_g040.1 104 KSRLCSKYNTAEGCRFGDKCHYAHGE 129 679*********************96 PP | |||||||
2 | zf-CCCH | 32.8 | 1.2e-10 | 275 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +Gd+C+FaHg Cse_sc013652.1_g040.1 275 FKTKLCENFTK-GSCTFGDKCHFAHG 299 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MDFGFNKKRG RPDAGANGNT GFKKSKQDTE SFQSGLGSKS KPCTKFFSTS GCPFGEGCHF 60 LHCVPGGFKA INPMSGGNPS LPPTVRNPVI PPSFPDGSSP PAVKSRLCSK YNTAEGCRFG 120 DKCHYAHGEW ELGKPTVPSH HEDPRSMGPP PGNRFSGGPR MGFNPPQEIA PAGFGASATT 180 KISVNAALGG PIIGKNGINS KQICRMTGVK LSVRDHESDP NLKNIELEGT FDQIKRASEM 240 VQQLIVNLTA AAGPHQHVFS KPFGPPPKPP GRRNFKTKLC ENFTKGSCTF GDKCHFAHGA 300 EELRSSGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-52 | C3H family protein |