PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013605.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 367aa MW: 41391.3 Da PI: 8.0403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013605.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.9	2.4e-15	175	222	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++hn+ ErrRR+riN+++ L++l+P+a K +Ka+ L ++++Y+k+Lq Cse_sc013605.1_g010.1 175 ATHNQSERRRRERINQKMKALQKLVPNA-----NKTDKASLLDEVIDYLKKLQ 222 69***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MAFSRLADYG VAEITWENGQ PAMHGLGRAN ETLESIVHQA TTSYQTQYQE IDLQQSQSLP 60 RARNLNSNVA SSSGPTYLRK RPRESVIVHD QCVGNLGNAN LQEDNISNSG TVNSKDNDTT 120 MMTWPSFDSP NQSMKSQKTD DDSACQYGSE NQEEECRTEG ETVRSQSCRR SRAAATHNQS 180 ERRRRERINQ KMKALQKLVP NANKTDKASL LDEVIDYLKK LQSQVQLMKN MQFPPQQMMM 240 SMPLQLQQQQ HQHQQQQQLQ MSMLARMGMG FGLQMGMPGV IPQPVHHPFM VPQAMLSPAH 300 AGATSQTIHS RPSTNTTVPF NNPHSTFLAQ QMNMDMYNNM AAFYRQQVNQ GKSLSVDSSQ 360 LDHVRGE

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MAFSRLADYG VAEITWENGQ PAMHGLGRAN ETLESIVHQA TTSYQTQYQE IDLQQSQSLP  60
RARNLNSNVA SSSGPTYLRK RPRESVIVHD QCVGNLGNAN LQEDNISNSG TVNSKDNDTT  120
MMTWPSFDSP NQSMKSQKTD DDSACQYGSE NQEEECRTEG ETVRSQSCRR SRAAATHNQS  180
ERRRRERINQ KMKALQKLVP NANKTDKASL LDEVIDYLKK LQSQVQLMKN MQFPPQQMMM  240
SMPLQLQQQQ HQHQQQQQLQ MSMLARMGMG FGLQMGMPGV IPQPVHHPFM VPQAMLSPAH  300
AGATSQTIHS RPSTNTTVPF NNPHSTFLAQ QMNMDMYNNM AAFYRQQVNQ GKSLSVDSSQ  360
LDHVRGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.1	1e-28	bHLH family protein