PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013482.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 864aa MW: 100059 Da PI: 7.929

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013482.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.3	1.2e-08	161	235	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Y++YAk++GF+vr ++k+ ++ k g +++ ++r+ +++rt+Ck ++v+ + + +++++ HnH+ Cse_sc013482.1_g060.1 161 QYYKDYAKRAGFEVRLGHHKEGTNPA---------PKAGALKKS------NSRKVSSKRTDCKTVFRVRHIPGKGYWCYDFVEGHNHS 233 69*************998873332.........445544443......4568999***********999999******** PP FAR1 89 la 90 l+ Cse_sc013482.1_g060.1 234 LV 235 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence
MSINVSSQIP NVPQTIRKPS YLYSLSNFLP LRASKIPEMA LNITSHVQIN MRVSLSPCIT 60 SLRFVRLDVM LMNIPTYYYV ILDNEYEPVP HSVGIVSEVE GCKIWVPDIP VGQKDNEYEP 120 VPHSVGIVSE VEGCKIWVPD IPVGQKPAYG MMYHSLEQAY QYYKDYAKRA GFEVRLGHHK 180 EGTNPAPKAG ALKKSNSRKV SSKRTDCKTV FRVRHIPGKG YWCYDFVEGH NHSLVSEEDS 240 VFLVSSREVT YTQQVFLYQA SQVNLGPVKG FNLLRQIYGD YDFIGASSVD CKNYRRDVLD 300 FIGKNDAQMR DVLDFIGKND AQMLVEMLMN KKDFLPNFSF EYQTGENNAL TNLFWADEYA 360 KRNYYAFGDV MSFDATFRTN NYKNKKDFLP NFSFEYQTGE NNALTNLFWA DEYAKRNYYA 420 FGDLYYIALL SSETKESYIW LLQYFKRAFV RAPKVIVTDQ DGSMKVAIES VFPLSRHRLC 480 MWHIMQKLTS KVGPVLAKDL TFKRRISDII EPEEFEDLWE RLLVDFDLKG HKWLSDMYNL 540 RHKWIPAYYR DEPMSGLMRT SSRSESENNA YGRLTSIDLT LWEFYNHFDS VVGCQRFSQR 600 KNDHDSRYTI PDMHTELDLE QEASELYTRS IFFDVQTEIY ASVISCMSVS VSANDSGKKY 660 VIQDTGEDEH ISRRHRQVEG VVNEVFYEVL CKPTEDFYQC TCKRFESYGL LCRHIFYVLR 720 LSKVKKFPKK YVLRRWSKDS LPPDHPDMIL GEIFRAVEYS VNRYADDPEL LQKFRDHQVQ 780 LMAKADVNVP IPKKTNKRDR LASILGVSQP IETIVNVPKQ CDAIRAEIAT KKASDKAAIK 840 ESKQKAKLAA KKVELSDMNA CVVT

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence

MSINVSSQIP NVPQTIRKPS YLYSLSNFLP LRASKIPEMA LNITSHVQIN MRVSLSPCIT  60
SLRFVRLDVM LMNIPTYYYV ILDNEYEPVP HSVGIVSEVE GCKIWVPDIP VGQKDNEYEP  120
VPHSVGIVSE VEGCKIWVPD IPVGQKPAYG MMYHSLEQAY QYYKDYAKRA GFEVRLGHHK  180
EGTNPAPKAG ALKKSNSRKV SSKRTDCKTV FRVRHIPGKG YWCYDFVEGH NHSLVSEEDS  240
VFLVSSREVT YTQQVFLYQA SQVNLGPVKG FNLLRQIYGD YDFIGASSVD CKNYRRDVLD  300
FIGKNDAQMR DVLDFIGKND AQMLVEMLMN KKDFLPNFSF EYQTGENNAL TNLFWADEYA  360
KRNYYAFGDV MSFDATFRTN NYKNKKDFLP NFSFEYQTGE NNALTNLFWA DEYAKRNYYA  420
FGDLYYIALL SSETKESYIW LLQYFKRAFV RAPKVIVTDQ DGSMKVAIES VFPLSRHRLC  480
MWHIMQKLTS KVGPVLAKDL TFKRRISDII EPEEFEDLWE RLLVDFDLKG HKWLSDMYNL  540
RHKWIPAYYR DEPMSGLMRT SSRSESENNA YGRLTSIDLT LWEFYNHFDS VVGCQRFSQR  600
KNDHDSRYTI PDMHTELDLE QEASELYTRS IFFDVQTEIY ASVISCMSVS VSANDSGKKY  660
VIQDTGEDEH ISRRHRQVEG VVNEVFYEVL CKPTEDFYQC TCKRFESYGL LCRHIFYVLR  720
LSKVKKFPKK YVLRRWSKDS LPPDHPDMIL GEIFRAVEYS VNRYADDPEL LQKFRDHQVQ  780
LMAKADVNVP IPKKTNKRDR LASILGVSQP IETIVNVPKQ CDAIRAEIAT KKASDKAAIK  840
ESKQKAKLAA KKVELSDMNA CVVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	792	798	PKKTNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1 family protein