PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013472.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 389aa MW: 45201.5 Da PI: 8.6733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013472.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	24	47	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++Cg + s k + + Hi + H Cse_sc013472.1_g030.1 24 YTCEYCGIVRSKKTLITAHIHSnH 47 9*******************9888 PP
2	zf-C2H2	19	3.9e-06	69	90	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF + +Lk+H+++H Cse_sc013472.1_g030.1 69 VCEECGVSFQKPAHLKQHMQSH 90 6*******************99 PP
3	zf-C2H2	18.7	4.7e-06	96	120	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s++rk++L+rH+ H Cse_sc013472.1_g030.1 96 FMCPidDCNSSYRRKDHLNRHLLQH 120 79*******************9887 PP
4	zf-C2H2	17.5	1.2e-05	167	191	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk+F+ s L++H +H Cse_sc013472.1_g030.1 167 HTCLepGCGKVFKYASKLQKHEESH 191 5788889**************9988 PP
5	zf-C2H2	19.1	3.5e-06	273	296	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C+ +Fs++snL++Hi++ H Cse_sc013472.1_g030.1 273 CSfdGCSLTFSNNSNLQQHIKSvH 296 88889****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MNEEEQEQEQ ENKKKTKVRD IRRYTCEYCG IVRSKKTLIT AHIHSNHKDE IKEKEGDKES 60 QEIGKKMNVC EECGVSFQKP AHLKQHMQSH SLERPFMCPI DDCNSSYRRK DHLNRHLLQH 120 KSKLFECLNE NCKKKYSVEG DMMRHVKEDH EIKGCKSDDD VKDKKEHTCL EPGCGKVFKY 180 ASKLQKHEES HVTFKILSSR ILSIAVKLET VEAFCAEPGC MKYFTNKECL KAHFQSSHQH 240 INCEICGSKQ LKKNIKRHLQ THVKVVSEER IICSFDGCSL TFSNNSNLQQ HIKSVHLQEK 300 PFICSFSGCG MRFSYKHVRD NHEKSGRHVY TLGDFVETDK QFHSNPRGGV KRKLPDTIRT 360 LMKKKTFPPS KNDDIHVGVT SPEHSEDNQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MNEEEQEQEQ ENKKKTKVRD IRRYTCEYCG IVRSKKTLIT AHIHSNHKDE IKEKEGDKES  60
QEIGKKMNVC EECGVSFQKP AHLKQHMQSH SLERPFMCPI DDCNSSYRRK DHLNRHLLQH  120
KSKLFECLNE NCKKKYSVEG DMMRHVKEDH EIKGCKSDDD VKDKKEHTCL EPGCGKVFKY  180
ASKLQKHEES HVTFKILSSR ILSIAVKLET VEAFCAEPGC MKYFTNKECL KAHFQSSHQH  240
INCEICGSKQ LKKNIKRHLQ THVKVVSEER IICSFDGCSL TFSNNSNLQQ HIKSVHLQEK  300
PFICSFSGCG MRFSYKHVRD NHEKSGRHVY TLGDFVETDK QFHSNPRGGV KRKLPDTIRT  360
LMKKKTFPPS KNDDIHVGVT SPEHSEDNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-133	C2H2 family protein