PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013260.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 434aa MW: 50105.4 Da PI: 4.3238

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013260.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39	2.6e-12	86	162	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 k+Y++YA+++GFsvr s++++ ++g + ++ +vC+keg ++ +k+ +e++ rt++ +rtgC+ l+++ ++ Cse_sc013260.1_g040.1 86 KMYENYAEKAGFSVRLSTQNTL-KSGIVERKYLVCNKEGLPKGVNKDtmseetSETQIRTSSISRTGCRQGLNLSSMR 162 68*************99998.7888*********999988888888777888899******999988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MPPPLTRSMT PSFNQRNQRN VIESESESDG DEITDINGTS PENSEISNIC EEIEVKEGDF 60 HYKPIVDESE KPKIGREYTT IEECIKMYEN YAEKAGFSVR LSTQNTLKSG IVERKYLVCN 120 KEGLPKGVNK DTMSEETSET QIRTSSISRT GCRQGLNLSS MRIIQNMNCT ILKKTIIIRS 180 FPVYRNLTKK RKKMSHKQQI YMQQLGGTNI GATRAHHLYA ATNGGYDSVD ATETEFRNNK 240 RDLNSHIGDS DAQMLITKME NRKKHVANFS FEYAVEDSQL TALFWADEMA KYNYREFGDT 300 ISFDATFRTN KTMAAPNGNF QNDEEEYEFV LNNYLLIDAV LDAFGEEPIS EYGSYRQVSV 360 WMRKNILNWL RLQDFYWDEI YGLDGEEEEE DEDEEDLENE EEAESEVVQQ GEMVQQGQIV 420 QQNEVEEEFQ SEVM

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MPPPLTRSMT PSFNQRNQRN VIESESESDG DEITDINGTS PENSEISNIC EEIEVKEGDF  60
HYKPIVDESE KPKIGREYTT IEECIKMYEN YAEKAGFSVR LSTQNTLKSG IVERKYLVCN  120
KEGLPKGVNK DTMSEETSET QIRTSSISRT GCRQGLNLSS MRIIQNMNCT ILKKTIIIRS  180
FPVYRNLTKK RKKMSHKQQI YMQQLGGTNI GATRAHHLYA ATNGGYDSVD ATETEFRNNK  240
RDLNSHIGDS DAQMLITKME NRKKHVANFS FEYAVEDSQL TALFWADEMA KYNYREFGDT  300
ISFDATFRTN KTMAAPNGNF QNDEEEYEFV LNNYLLIDAV LDAFGEEPIS EYGSYRQVSV  360
WMRKNILNWL RLQDFYWDEI YGLDGEEEEE DEDEEDLENE EEAESEVVQQ GEMVQQGQIV  420
QQNEVEEEFQ SEVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	193	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-16	FAR1 family protein