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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc013142.1_g090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | NF-YC | ||||||||
Protein Properties | Length: 172aa MW: 18985.6 Da PI: 5.1225 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.3 | 1.5e-17 | 11 | 56 | 1 | 43 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaea 43 ql+sfw++q ie+++dfkn lPlar+kki+k+dedv+mis+ea Cse_sc013142.1_g090.1 11 QLQSFWANQyreIENVNDFKNCVLPLARVKKIMKVDEDVRMISSEA 56 89******99999*******************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MLQQQQQVQQ QLQSFWANQY REIENVNDFK NCVLPLARVK KIMKVDEDVR MISSEAHGDF 60 NLTLLDHLIA EPGLNNVGCC NELNVGYAAD GYARSRGVGA CVVTFTVGGL SVLNAIVGAY 120 SESLPIICIV GGPNSNEYGT NRILHHTIGL ADFSQELCCF QTVTCFQVYN HV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 7e-18 | NF-YC family protein |