PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013109.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 482aa MW: 53176.4 Da PI: 7.4099

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013109.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.8	7.2e-10	197	253	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+ ++ a++k++g Cse_sc013109.1_g010.1 197 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARSYDLAALKYWG 253 57*****************4444.2344336655.7799999***********98 PP
2	AP2	46.6	8.5e-15	296	347	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+ eAa+a++ a+ k++g Cse_sc013109.1_g010.1 296 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATESEAAEAYDIAAIKFRG 347 57**************988532...5******88**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MARENKWLSF SLSPMEMFTS STSQPQQFFF NDNNFYSNGW ATNGKDNNNC NNINSQPEEA 60 PKLEDFLGGD INNVNTTNGF VGYSEVNSSQ TETQDSSTLT NIYDNNSSVY FNGVQQQGFQ 120 TFSTNSGSEV DDSSTQQLSE FVSESGIELG GYGGRCSVNG LSLGITAAVV KDDKKAIVAV 180 GGGVRKISTD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA 240 ARSYDLAALK YWGPTATTNF PVANYAIELE EMKNATKQEF IASLRRKSSG FSRGASIYRG 300 VTRHHQQGRW QARIGRVAGN KDLYLGTFAT ESEAAEAYDI AAIKFRGLNA VTNFEMKRYD 360 VEAISNSSLP IGGSAKRLKI SLEAEQKPSF ISNHHQLTQY NAGNNGNSIS FANIPPISAI 420 PYAMPFDPNS THAYHHQNFF HHLQPSNQGG PTTSGSLSSV GNPMPLLPPT SAEFFIWPHQ 480 SY

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MARENKWLSF SLSPMEMFTS STSQPQQFFF NDNNFYSNGW ATNGKDNNNC NNINSQPEEA  60
PKLEDFLGGD INNVNTTNGF VGYSEVNSSQ TETQDSSTLT NIYDNNSSVY FNGVQQQGFQ  120
TFSTNSGSEV DDSSTQQLSE FVSESGIELG GYGGRCSVNG LSLGITAAVV KDDKKAIVAV  180
GGGVRKISTD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA  240
ARSYDLAALK YWGPTATTNF PVANYAIELE EMKNATKQEF IASLRRKSSG FSRGASIYRG  300
VTRHHQQGRW QARIGRVAGN KDLYLGTFAT ESEAAEAYDI AAIKFRGLNA VTNFEMKRYD  360
VEAISNSSLP IGGSAKRLKI SLEAEQKPSF ISNHHQLTQY NAGNNGNSIS FANIPPISAI  420
PYAMPFDPNS THAYHHQNFF HHLQPSNQGG PTTSGSLSSV GNPMPLLPPT SAEFFIWPHQ  480
SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-140	AP2 family protein