PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012995.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 840aa MW: 96917.7 Da PI: 8.421

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012995.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.1e-20	72	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvk 69 Y+eYA+e GF+vr+ ++++k++++ + f+Cs+eg + + k++ ++ +rr+ra++r+gCka l+++ Cse_sc012995.1_g050.1 72 LYKEYAREGGFEVRRGGQSNRKKKQNPDLKYFCCSREGVKPSPKDDiskkdksktdtpssdiaevvKVIKRRKRASQRCGCKALLRLR 159 7*************9999999999*********9999988999***********99999*************** PP FAR1 70 kekdgkwevtkleleHnHela 90 ++ ++k++v+++ ++HnH+l+ Cse_sc012995.1_g050.1 160 QTPENKFVVYTFFEKHNHSLV 180 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MSNSLEDDSM QGEPSTPRSS NTVEDNVVDA ETVTQVGSYQ PTPPGSKFWI PEAKNKPVEG 60 TQFDTIEQAL KLYKEYAREG GFEVRRGGQS NRKKKQNPDL KYFCCSREGV KPSPKDDISK 120 KDKSKTDTPS SDIAEVVKVI KRRKRASQRC GCKALLRLRQ TPENKFVVYT FFEKHNHSLV 180 HENDYKYLRA ARKLTFSKQH LLRQLSNANI GRTKAWKVMI EMYGRFENIG VTDVECRNYR 240 RGLDNFIGNR DAHMVVEKLL SRQEFFSDFS VEYKQHKKEK TLIGLFWADS QAKLNYAAFG 300 DVVSFDATFR SNRYNMVLVP FTGIDNHNRC ILFGAALLAS EAAKRYTWLL KRFKKIFGSA 360 PKVVVTDQDP LMKIAIEKIF PDSRHRLCMW HIMQKLSGKV GPTLCSNTDF KRRLCDIVWT 420 DKIDSDVFET EWASIMNDFN LNDNKWLKDM FAMRTKWIPA YFRHEPMSGL MRTTSRSESE 480 NHFLRQITNP HLSLIEFLCH YDTAIDSQRF INGKNTHDSN YKTPDFKTHL QIEREAAAFY 540 THTIFYDVQD EIFSSLMHCC SLTVQESDSC STFVIRDTEA DYRINDSFVE AKYEVRYVPD 600 QCSAQCTCLS SSTSQNNTWI IDGLNKLSVT NLLSLGTPIQ QQQIQYVVDA TLREIYSNVE 660 ESINHLVGDI QKLHIYRDDQ LALMEKAKLD VPNPPKLNTN EAYARALGVT EPVELTILTP 720 TDINNKGQVI RTRRKSKFEI ATELADKPKR RCKSCGKMAR HDSRNCPKKK KGLQDEDVDE 780 DVDQFMDDTF EYETFHVHAP KSNTMNATDV EDNNKRRCGY CGNYAYHDAR NCPFKTNGHN

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MSNSLEDDSM QGEPSTPRSS NTVEDNVVDA ETVTQVGSYQ PTPPGSKFWI PEAKNKPVEG  60
TQFDTIEQAL KLYKEYAREG GFEVRRGGQS NRKKKQNPDL KYFCCSREGV KPSPKDDISK  120
KDKSKTDTPS SDIAEVVKVI KRRKRASQRC GCKALLRLRQ TPENKFVVYT FFEKHNHSLV  180
HENDYKYLRA ARKLTFSKQH LLRQLSNANI GRTKAWKVMI EMYGRFENIG VTDVECRNYR  240
RGLDNFIGNR DAHMVVEKLL SRQEFFSDFS VEYKQHKKEK TLIGLFWADS QAKLNYAAFG  300
DVVSFDATFR SNRYNMVLVP FTGIDNHNRC ILFGAALLAS EAAKRYTWLL KRFKKIFGSA  360
PKVVVTDQDP LMKIAIEKIF PDSRHRLCMW HIMQKLSGKV GPTLCSNTDF KRRLCDIVWT  420
DKIDSDVFET EWASIMNDFN LNDNKWLKDM FAMRTKWIPA YFRHEPMSGL MRTTSRSESE  480
NHFLRQITNP HLSLIEFLCH YDTAIDSQRF INGKNTHDSN YKTPDFKTHL QIEREAAAFY  540
THTIFYDVQD EIFSSLMHCC SLTVQESDSC STFVIRDTEA DYRINDSFVE AKYEVRYVPD  600
QCSAQCTCLS SSTSQNNTWI IDGLNKLSVT NLLSLGTPIQ QQQIQYVVDA TLREIYSNVE  660
ESINHLVGDI QKLHIYRDDQ LALMEKAKLD VPNPPKLNTN EAYARALGVT EPVELTILTP  720
TDINNKGQVI RTRRKSKFEI ATELADKPKR RCKSCGKMAR HDSRNCPKKK KGLQDEDVDE  780
DVDQFMDDTF EYETFHVHAP KSNTMNATDV EDNNKRRCGY CGNYAYHDAR NCPFKTNGHN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	123	RKKKQNPDLKYFCCSREGVKPSPKDDISKKDK
2	749	771	KRRCKSCGKMARHDSRNCPKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-72	FAR1 family protein