PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012971.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 418aa MW: 47075.1 Da PI: 7.2017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012971.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	243	288	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P +K++K + L Av YI++L Cse_sc012971.1_g070.1 243 NHVEAERQRRENLNQRFYALRSVVPYV-----TKMDKTSLLGDAVCYINEL 288 699*********************8.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDDEFLILSP SSSSSIIHQN THNSYHKLQC LLQTQPNDPW AFAIFWKTTY NHGHGRPWTL 60 TWGDGYFLQN PNKPDFDNTD GTDWFYVVSL ARSFGIGDGS APSNSFTNNS VIWLTGAHSL 120 ISFNCERAKE AYIHGLETLV YIPTTNGVVE MGSYYVINHT ESDLAHRAKS LFGASSSSLS 180 SFSPPSNNLV KQPNNYLISF GEMVSRLPQD EERSDHSDSD CQLVLKTSKK RSKKKKGCDP 240 PLNHVEAERQ RRENLNQRFY ALRSVVPYVT KMDKTSLLGD AVCYINELKN KVEELEAQLQ 300 AMNNQPKLKK MKIEAPDVTV VPNSQGANIY KNGNRSKMNE TLEVEVRMVG DKAMIRVQSG 360 NGDWPTAKLM DALREMEAKV HHASMSCIND VMLQDVVARV TGVTGDEVKY HLLARLYQ

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDDEFLILSP SSSSSIIHQN THNSYHKLQC LLQTQPNDPW AFAIFWKTTY NHGHGRPWTL  60
TWGDGYFLQN PNKPDFDNTD GTDWFYVVSL ARSFGIGDGS APSNSFTNNS VIWLTGAHSL  120
ISFNCERAKE AYIHGLETLV YIPTTNGVVE MGSYYVINHT ESDLAHRAKS LFGASSSSLS  180
SFSPPSNNLV KQPNNYLISF GEMVSRLPQD EERSDHSDSD CQLVLKTSKK RSKKKKGCDP  240
PLNHVEAERQ RRENLNQRFY ALRSVVPYVT KMDKTSLLGD AVCYINELKN KVEELEAQLQ  300
AMNNQPKLKK MKIEAPDVTV VPNSQGANIY KNGNRSKMNE TLEVEVRMVG DKAMIRVQSG  360
NGDWPTAKLM DALREMEAKV HHASMSCIND VMLQDVVARV TGVTGDEVKY HLLARLYQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	236	KRSKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	4e-56	bHLH family protein