PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012941.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 784aa MW: 89402.1 Da PI: 8.6673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012941.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.1	9.2e-11	110	188	19	90
FAR1 19 skkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +k+ r+ ++++ +vC++eg+++ + + ++k++r+++ + tgCka+++ ++ + k+++t +++ HnHel Cse_sc012941.1_g030.1 110 GNKRLRSSIVKQKYLVCNREGSPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSTKYKLTVFDSIHNHELE 188 455567778999999******9988888999988899999999***********9**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MDSIPNSLVS SDRSSSSQEI GATELSSSSE NVVVSDLPST TEDIVVSDDV SAKYTEEIVA 60 YEQGDESAAI KKLTALKTPE SFSTHSNFDT PGGTVYYIPK VHVDVLLAKG NKRLRSSIVK 120 QKYLVCNREG SPKGIHVDTL DLENSDKQKR SSNLHITGCK ARVMFELIPG STKYKLTVFD 180 SIHNHELESK EYKHLSKTER QLTYTEQLFI VKAASVNIGA TRAHHLLTGL KGSYLLVHGT 240 TVDFKNFFRS VNCYIGDSDA QMLIAKMENR KKHVPDFSFD YLVENAELSA IFWADEVSKY 300 NYKEFCDVVS FDATYRTNKY KMMFVSFTAI DNHRKCVTVV AGLLKNETAN SYIWLLKAFI 360 KAFGKAPSIV VTDQDGAMRK AIEQEFVGSK HRLCMWHITQ KLPGKICSKI YDHTDFKRKF 420 NQIVWNMYIG PDEFEYQWGK LLDEFKLQNH KWLTKMFRIS SCWIPAFFVD SPLCGLMMTT 480 SRSESENSFF SHFTNSGSTL MNFMNCFETA MEKHRHIQER LDNKSIDYVP TLRTYLKIER 540 HASKVYTRPL FELVQAEIFA GTWFCQIDTK SLVEGSEVSV IKEKKFVDEL MEKKKAKKKE 600 KSKKKANDND KNEEEEEPIN LFHREDGLCK NANVEMIPNQ YILRRWTKNL IPVGLRNKRN 660 MYDETRLAVF IEKLKLLKID VEADCPNPPS KDKLDNLEEL VGVPKPPVVA VKNPSGFAVK 720 NPSGCKPKGR EKTRIKGGKE QAIDESSINR NSCSICGAKD GHNKRTCPNK YRVEDDLVQS 780 QVTS

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MDSIPNSLVS SDRSSSSQEI GATELSSSSE NVVVSDLPST TEDIVVSDDV SAKYTEEIVA  60
YEQGDESAAI KKLTALKTPE SFSTHSNFDT PGGTVYYIPK VHVDVLLAKG NKRLRSSIVK  120
QKYLVCNREG SPKGIHVDTL DLENSDKQKR SSNLHITGCK ARVMFELIPG STKYKLTVFD  180
SIHNHELESK EYKHLSKTER QLTYTEQLFI VKAASVNIGA TRAHHLLTGL KGSYLLVHGT  240
TVDFKNFFRS VNCYIGDSDA QMLIAKMENR KKHVPDFSFD YLVENAELSA IFWADEVSKY  300
NYKEFCDVVS FDATYRTNKY KMMFVSFTAI DNHRKCVTVV AGLLKNETAN SYIWLLKAFI  360
KAFGKAPSIV VTDQDGAMRK AIEQEFVGSK HRLCMWHITQ KLPGKICSKI YDHTDFKRKF  420
NQIVWNMYIG PDEFEYQWGK LLDEFKLQNH KWLTKMFRIS SCWIPAFFVD SPLCGLMMTT  480
SRSESENSFF SHFTNSGSTL MNFMNCFETA MEKHRHIQER LDNKSIDYVP TLRTYLKIER  540
HASKVYTRPL FELVQAEIFA GTWFCQIDTK SLVEGSEVSV IKEKKFVDEL MEKKKAKKKE  600
KSKKKANDND KNEEEEEPIN LFHREDGLCK NANVEMIPNQ YILRRWTKNL IPVGLRNKRN  660
MYDETRLAVF IEKLKLLKID VEADCPNPPS KDKLDNLEEL VGVPKPPVVA VKNPSGFAVK  720
NPSGCKPKGR EKTRIKGGKE QAIDESSINR NSCSICGAKD GHNKRTCPNK YRVEDDLVQS  780
QVTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-62	FAR1 family protein