PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012886.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 272aa    MW: 30975.5 Da    PI: 5.7801
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012886.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W+ eEd++l+ +++++G ++W++ +++ g+ R++k+c++rw +yl
  Cse_sc012886.1_g010.1 14 KGPWSHEEDQILISYIQKHGHPNWRALPKHAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding52.98.3e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++++eE+e +++++++lG++ W+ Ia++++ gRt++++k+ w+++l
  Cse_sc012886.1_g010.1  67 RGNFSKEEEEMIIHLHEKLGNR-WSVIAAKLP-GRTDNEIKNVWHTHL 112
                            89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGRAPCCEKM GLNKGPWSHE EDQILISYIQ KHGHPNWRAL PKHAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEEMIIH LHEKLGNRWS VIAAKLPGRT DNEIKNVWHT HLKKRLESHQ  120
TTTEVSKKRH PKSKCASKAT SHEEPIVSQC LVQQEDISTD EKRSTSNQPS SSESSSVTEA  180
TDSSNIARLE EIDQETFLDD SFWSETLSGE VDDIVESNTI TNVSFVEFPN TASPIIGNGD  240
NKGSFASYDT NGMDLWYDIF TRMEELPELP EF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-81MYB family protein