PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012880.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 496aa MW: 55717.6 Da PI: 5.2365

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012880.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.8	3.1e-12	147	233	3	83
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA++ GF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++r+++ + tgCka+++ ++ ++k+++t +++ Cse_sc012880.1_g010.1 147 YMKYASKPGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSSKYKLTVFDS 233 99**********998887.8898*********99988888999888899999999**********99999999874 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MDLIPNSSVS SDPSSSITES ATESDLSSDP SSSITESATE SDRSSSDPSS SITVSDDVFV 60 TESASEDVVV SDDVSAKYTE EIVAYEHGDE SAAIKKLNAL KTPESFSTHS NFDTPGGTVY 120 YIPKVPVDVL LAKGNVFNSV DECISAYMKY ASKPGFVVRK SCQKRLRSGI VKQKYLVCNR 180 EGCPKGIHVD TLDLENSDKQ KRSSNLHITG CKARVMFELI PGSSKYKLTV FDSATRAHHL 240 LTGLKGSYLL VHGTTVDFKN FFRSVNCYIG DSDAQMLIAK MENRQKHVPD FSFDYLVENA 300 ELSAIFWADE VSKYNYKEFC DVVSFDATYR TNNLVEGSEV SVIKEKKFVD EVMEKKKAKK 360 KDKFKKKGDD TDKNEEEEEL INLFHREDVL YKNANVEMIP NQYILRRWTK NLIPAGLRNK 420 RNRYGEKNEI VENYANDATS IVDHCVHMLS KDETRLAAFI EKLKLLKLDV EADCPNPPSK 480 DKLDNLEELS ECQSLL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MDLIPNSSVS SDPSSSITES ATESDLSSDP SSSITESATE SDRSSSDPSS SITVSDDVFV  60
TESASEDVVV SDDVSAKYTE EIVAYEHGDE SAAIKKLNAL KTPESFSTHS NFDTPGGTVY  120
YIPKVPVDVL LAKGNVFNSV DECISAYMKY ASKPGFVVRK SCQKRLRSGI VKQKYLVCNR  180
EGCPKGIHVD TLDLENSDKQ KRSSNLHITG CKARVMFELI PGSSKYKLTV FDSATRAHHL  240
LTGLKGSYLL VHGTTVDFKN FFRSVNCYIG DSDAQMLIAK MENRQKHVPD FSFDYLVENA  300
ELSAIFWADE VSKYNYKEFC DVVSFDATYR TNNLVEGSEV SVIKEKKFVD EVMEKKKAKK  360
KDKFKKKGDD TDKNEEEEEL INLFHREDVL YKNANVEMIP NQYILRRWTK NLIPAGLRNK  420
RNRYGEKNEI VENYANDATS IVDHCVHMLS KDETRLAAFI EKLKLLKLDV EADCPNPPSK  480
DKLDNLEELS ECQSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-07	FAR1 family protein