PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012846.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 412aa MW: 47377.6 Da PI: 5.4095

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012846.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.7	1.3e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC+ C + H+ H++v Cse_sc012846.1_g030.1 17 ARACDNCIKKRARWYCAADDAFLCQFCDTLVHSAnplargHERV 60 578*****************************657888888876 PP
2	CCT	68.8	1.5e-23	365	408	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Cse_sc012846.1_g030.1 365 REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 408 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MVLTETKLAN VMGGKTARAC DNCIKKRARW YCAADDAFLC QFCDTLVHSA NPLARGHERV 60 RLKIASLRLS SLDIPSATWD KGFTKKSRTP RSRNKHASHQ TRKSKEPRLS LSPLHLVPES 120 ESDDLKTTNS DDQLPYQVPV FDPFSVDPCF SKDFENLSTP DESEAPFHLN NFNGLILPSE 180 LELAEFAADV ESLLGKSLDE EPFDIESLGM VDRRLESLDD VVKVEEEVHC EVVDSEPDMM 240 KEPFELNFDY DSSVPWEEED RMCVVKNENE KCEVVCDDQV MFHTENDHNV HDKSIKLKKM 300 LKLDYEGVIG AWDDDRSPWI SGDRPELDPN DCWLDCMGGC GKMEHYHCGD MGMMMWCSSR 360 LDGGREARVS RYKEKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTSF VA

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MVLTETKLAN VMGGKTARAC DNCIKKRARW YCAADDAFLC QFCDTLVHSA NPLARGHERV  60
RLKIASLRLS SLDIPSATWD KGFTKKSRTP RSRNKHASHQ TRKSKEPRLS LSPLHLVPES  120
ESDDLKTTNS DDQLPYQVPV FDPFSVDPCF SKDFENLSTP DESEAPFHLN NFNGLILPSE  180
LELAEFAADV ESLLGKSLDE EPFDIESLGM VDRRLESLDD VVKVEEEVHC EVVDSEPDMM  240
KEPFELNFDY DSSVPWEEED RMCVVKNENE KCEVVCDDQV MFHTENDHNV HDKSIKLKKM  300
LKLDYEGVIG AWDDDRSPWI SGDRPELDPN DCWLDCMGGC GKMEHYHCGD MGMMMWCSSR  360
LDGGREARVS RYKEKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRTSF VA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	392	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-88	CO-like family protein