PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012592.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 335aa MW: 36632.8 Da PI: 10.2793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012592.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I + ++ gR++k+c++rw + Cse_sc012592.1_g030.1 16 KGPWSPEEDEMLQNLVEKHGPRNWSLIGKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	56.3	7.4e-18	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Cse_sc012592.1_g030.1 70 SFTPEEDETILRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112 69****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MFMASHNPKR DIDRIKGPWS PEEDEMLQNL VEKHGPRNWS LIGKSIPGRS GKSCRLRWCN 60 QLSPQVEHRS FTPEEDETIL RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKSSSM 120 TNEEFSDFAV QQPLLKRSVS DGSAVVGNGF GRYFNPGSPS GSDVSDSSVH VFRPVARTGA 180 VVAPPSPPFA PSQVVDPPTS LSLSLPGVEN ETTPTVTVAA TTRSPVASPL PPPSPVAPIL 240 ALPLRKFPVN LNSNVDLMTT IPMAISTAMR DLKVSRDVAT VEQQEKVVAA PFSDEFMSVM 300 QEMIRKEVRN YMSGGGGFRN GVVPVVKRIG ISKID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-81	MYB family protein