PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012576.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 745aa MW: 82800.5 Da PI: 5.8778 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.6e-19 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+ qVk+WFqN+R+++k Cse_sc012576.1_g010.1 62 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 117 688999***********************************************998 PP | |||||||
2 | START | 201.8 | 2.8e-63 | 251 | 472 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela +a++el+++a+ +ep+Wv s+ es+n+de++++f+++ + ++ea+r s vv+m++++lve+l+d++ qW+ + Cse_sc012576.1_g010.1 251 ELAVTAMEELIRMAQIGEPLWVPSPddpahESLNEDEYIRSFPRGIGprptgLKSEASRNSNVVIMNHMNLVEILMDVN-QWSSVFCg 337 57899***************************************999********************************.******99 PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155 +a+t+ev+s+g galqlm+ae+q++splvp R+ fvRy++q+g+g wv+vdvS+ds ++ + + R +++pSg+li+ Cse_sc012576.1_g010.1 338 ivsRAMTTEVLSTGvagnynGALQLMTAEYQVPSPLVPtRENCFVRYCKQHGEGMWVVVDVSLDSVRSSS----IPRYRRRPSGCLIQ 421 999***************************************************************9976....677777******** PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ng+s+vtw+eh++++ + +++++lv+sgla+gak+wvatl+rqce+ Cse_sc012576.1_g010.1 422 EMPNGYSRVTWIEHIEVENGDVNNMYKVLVNSGLAFGAKRWVATLERQCER 472 *************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence |
MFQPNMFENL HHQQHLGDMG HKPPENHLDM LGDDEHDSKS GTDIMEGASG DDQDPNQHPN 60 KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELGRRLSL EPLQVKFWFQ NKRTQMKAQH 120 ERYDNTQLRN ENDKLRAENI RYKEALANAV CPSCGGPPAI GEMSFDEQQL RVENLRLREE 180 IDRISGIAAK YVGKQAITFP DVSSHGPSHS LDLPVANFIP QQGMVGDMYG ASDLLRSMSG 240 TTEAEKPIII ELAVTAMEEL IRMAQIGEPL WVPSPDDPAH ESLNEDEYIR SFPRGIGPRP 300 TGLKSEASRN SNVVIMNHMN LVEILMDVNQ WSSVFCGIVS RAMTTEVLST GVAGNYNGAL 360 QLMTAEYQVP SPLVPTRENC FVRYCKQHGE GMWVVVDVSL DSVRSSSIPR YRRRPSGCLI 420 QEMPNGYSRV TWIEHIEVEN GDVNNMYKVL VNSGLAFGAK RWVATLERQC ERIASAMASN 480 IPSGDVGGNG EDDVRVMTRK SMDDPGRPPG IVLSAATSFW LPIPPKQVFN FLRDENSRSE 540 WDILSNCGHV QEMAHIANGR DPGNCVSLLR VNSANSSQSN MLILQETSSD ATGSYIIYAP 600 VDIASMNVVL SGGDPAYVAL LPSGFAILPD GQGRYEGEVG TTGGSLLTVA FQILVDSVPT 660 AKISLGSVAT VNTLIKCTVE RIKCAFGQWK RENNLAGDDF SLSSQRMKEV KNEPSKILDL 720 MGIVCQSDAT SGSHFHRFMG YRFGY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |