PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc012558.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 1106aa MW: 122927 Da PI: 8.0979 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.2e-30 | 218 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk se+prsYY+Ct+++Cpvkkkv ++ d+++ +i+Y+g+Hnh+ Cse_sc012558.1_g030.1 218 SDGYNWRKYGQKQVKASEHPRSYYKCTHPNCPVKKKVGQAL-DGHISDIVYKGKHNHD 274 7***************************************9.***************7 PP | |||||||
2 | WRKY | 102.3 | 2.7e-32 | 425 | 483 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ dpk v++tYeg+Hnh+ Cse_sc012558.1_g030.1 425 LDDGFKWRKYGQKVVKGNTNPRSYYKCTFPGCNVRKHVERAPLDPKSVVTTYEGKHNHD 483 59********************************************************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1106 aa Download sequence |
MTETNGGSPQ QQPRRQPPPM LSLPQKQQTS SFENIFTGGP SSGFSPGPMT LVSNYFSDHF 60 SDGSFSQLLA GAMNSPVSQI SSDDNKNISS RGFKDKRPMD LVISQSPTGF MFPNLFSPSG 120 LLNSPGFFSP LQSPLVSHQQ ALAHVTAQAA FSQSYFNNVQ PENYTGGLGT VVNEEETRMV 180 NANAELEDSQ IGSPDELSVS QSDVSESQHV ISGSADISDG YNWRKYGQKQ VKASEHPRSY 240 YKCTHPNCPV KKKVGQALDG HISDIVYKGK HNHDPPPPNK RGKDSADVNK LNNSQMETRV 300 AEQPVADQGF NQMMRNDQGF SQLMRNDQGF HQMARNDQGY NQLMENVQGS NQLTRNDQVS 360 NQLMKNDQGS NQLMRIDEPN DEPNPKRRNT ETGPVTVPAD HSTSAHKVVS EPKIVVQTRS 420 EVDLLDDGFK WRKYGQKVVK GNTNPRSYYK CTFPGCNVRK HVERAPLDPK SVVTTYEGKH 480 NHDIPVSRHR GYNNNNGSGG AAARRKEPKL GNNERPVLLQ MKEEEITAVG RLYFVLINMI 540 PAQGGMGIHE HFPPGPWCCP FVGKMFHDHR IQALNNIKNH NDEDENNQHD NGECGRLSLL 600 SSEAENVAAG WPSWLCEVAA EAVRGWLPLK SDSYEKFEKI GQGTYSSVFR ARHAASGRMV 660 ALKKVRFDNL KPDSVKFMAR EITILRSLDH PNIMKLEGII TSQVSCIIYL VFEYMEHDLA 720 GLLSSPDIKF SHSQIKCYMR QLLNGIEHCH SRGVLHRDIK TANILVNNEG VLKIGDFGLA 780 KIYGPMSKEP LTSHVVTLWY RPPELLLGCT KYGTSVDLWS VGCVFAELFL GRPILKGRTE 840 VEQLHRIFKL CGTPPDDYWN KSKLPLATMF KPHHAYESTL HERCKDIPKT ALNLIETLLS 900 VDPCKRGTAG SALESEYFNT KPDVCDPASL PKYPPNKQIH SKARDEGHRK KPGGAVGASR 960 NPTRARKTYQ EHTSFSKVVP TEVNAESHVP KGSRDPVSAF VQLTEISESD GICALPTQTT 1020 ASNGGFVWAT RRRKHGGHLT QSSGSVTPRV LKTSASQRMP ENVESTSRVC GGFRNPASFD 1080 ISKVHNSQDL LNDDDESETF FDAHAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-98 | WRKY family protein |