PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012326.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38568.5 Da PI: 7.6502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8.1e-09 | 13 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G + + R++k+c++rw +yl Cse_sc012326.1_g040.1 13 RGLWSPEEDDKLIKHITNHGHR--------L--QRCGKSCRLRWINYL 50 788*****************99........5..5************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Cse_sc012326.1_g040.1 56 RGAFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 99 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence |
MGHHCCSKQK VKRGLWSPEE DDKLIKHITN HGHRLQRCGK SCRLRWINYL RPDLRRGAFT 60 EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL DPNTHNLLSP 120 HQIPIINANN SKNIDPNKPV FSIINNTSSQ TKDTKKVQAF QPHFSTVVND DHVTSQKLYE 180 NSTTLKSSNL DYHDYNLLMK NDASHQSTMG FSSQPFVEST KMHMPILLPV SSSSNHIDYG 240 TMMQSWGGNV NVTNVGAAFV NTRRPEAYQE MVQPHMVVAQ EFVNKGLDLS DGGEVQGQTN 300 IDMSSFEGCN IDLEFMEAAF MPCGMYSNVG TLDHLAWDCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 4e-73 | MYB family protein |