PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012265.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 428aa MW: 49067.5 Da PI: 9.0529

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012265.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.7e-15	95	200	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 +Y YA ++ Fs+rks+sk++ +ge+t++ vC++ gk+++ k + +++ + + t t+Cka+++ k Cse_sc012265.1_g050.1 95 MYLGYALKARFSIRKSTSKRK--KGEVTHKYKVCNRAGKPRKPIVKdtlahgsqtvdnqkdggnKPRQKCNFNYTVTDCKACVRFKAI 180 799***********99988..899**********99988889******99998666677788999*********** PP FAR1 72 k.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc012265.1_g050.1 181 HgTSSFKLYEFVENHNHPLL 200 9***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MDSTTENYDQ EDTDVPVVSP MQTKANVSIQ SPINDEQVNS NEDVSTEYSD LDDSETDDEC 60 IPTPKGHKYW IPEVPADEKP SEGNVFDTFD EAYGMYLGYA LKARFSIRKS TSKRKKGEVT 120 HKYKVCNRAG KPRKPIVKDT LAHGSQTVDN QKDGGNKPRQ KCNFNYTVTD CKACVRFKAI 180 HGTSSFKLYE FVENHNHPLL DENNIDLLKA QRKLDFSDKL FIHRASLSNL GPTKAHRLRV 240 AFMGGYQKVR GKPSDWKNFR QSVNKYIGPR DAQIYRMIFV PFTGIDHNQK CVTFGAALIS 300 DETIESYKWI LTAFKQVHVK EPILVVTDQD PALRNEVEAV FPEAHHRLLK DTLVQGKQND 360 DNQNDAVKKP RQKRNSNYTV TDCKACVRFK AIHGTSSYKL YRFVETIITP FWMKITQIFF 420 VSRIFIGR

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MDSTTENYDQ EDTDVPVVSP MQTKANVSIQ SPINDEQVNS NEDVSTEYSD LDDSETDDEC  60
IPTPKGHKYW IPEVPADEKP SEGNVFDTFD EAYGMYLGYA LKARFSIRKS TSKRKKGEVT  120
HKYKVCNRAG KPRKPIVKDT LAHGSQTVDN QKDGGNKPRQ KCNFNYTVTD CKACVRFKAI  180
HGTSSFKLYE FVENHNHPLL DENNIDLLKA QRKLDFSDKL FIHRASLSNL GPTKAHRLRV  240
AFMGGYQKVR GKPSDWKNFR QSVNKYIGPR DAQIYRMIFV PFTGIDHNQK CVTFGAALIS  300
DETIESYKWI LTAFKQVHVK EPILVVTDQD PALRNEVEAV FPEAHHRLLK DTLVQGKQND  360
DNQNDAVKKP RQKRNSNYTV TDCKACVRFK AIHGTSSYKL YRFVETIITP FWMKITQIFF  420
VSRIFIGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	138	KRKKGEVTHKYKVCNRAGKPRKPIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	6e-16	FAR1 family protein