PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc012225.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 318aa    MW: 36222.6 Da    PI: 8.683
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc012225.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.71.7e-16237283248
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 
                            e++isle+++k F +pi ++A  L v+ ++LKriCR++GI+ WP+R+
  Cse_sc012225.1_g010.1 237 ESSISLEEIKKDFGKPIDEVAAILHVSRSTLKRICRNLGIREWPSRQ 283
                            789*******************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MQHTRHRYQL LFKNGGISIG GVEKELIKTS NERRRNELAE IFIVLKTVCD THKLPLAQTW  60
SLSDCSSFVA NSGKLEQMCS SFKKSCIGKI CMSTGDLPFY IRDMSRWEYH VSSTERRLEK  120
SRGVVGRSLL TCGSWFCKDV TELDEDDYPL VPFARISKLT SCLAIYIKTI QLATEYVVEL  180
FLPTHSTNKA DLQSLVKRMK QQNVFHLACD SGAVGTSHGD VLYPEKVITH RKRRRSESSI  240
SLEEIKKDFG KPIDEVAAIL HVSRSTLKRI CRNLGIREWP SRQDNDRSVG FEETIDLYRE  300
AAKVDVLEDS LLLRSPGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2231236RKRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.13e-43Nin-like family protein