PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012204.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 919aa MW: 103366 Da PI: 5.4603

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012204.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.5	4.2e-16	686	731	2	47
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 e +is++++sk++ +p+++AA +Lgv+ ++LKriCR + I+RWP+ Cse_sc012204.1_g040.1 686 EMSISVKEISKHYGKPMEEAAGNLGVSRSTLKRICRSLDIPRWPYK 731 5689****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MQRNNECGSS KDQASSGSNV LNALNSKYRC LSEPQTSASR PDNYNGCRNY LTHLWVFGSR 60 EADVELLPSS FSKLLEDENS IDPQRVKDKI THAISALSLR DPHVLVQFWS LTTVQKRCFL 120 TTLDQPFGLG VVDEGLYLYR QESERRNFVV NGDHKEQLAP PGRVYRQKLP EWSLDVQTLP 180 TIDLDVSYNI YGYIDLPVFE PDNGSCVGVL EIVSSSSYVD YAFEVQEVSR ALKEHNLKSP 240 MAFEDPRFYV RDERRQHELD EIYSMLKTVC DLQKLPLAQM WALSGYSSIV VNSGNLESSC 300 SSFNKNCIGK VCMSTSDLPF YVRDLSTWGF REACRERHLD KSQGIVGKSL TSRGLCFCKD 360 VTKLGKEEYP MASYARGYEI TSCLAIYLIS FESDIEYVIE FVLPPHNANE ADLQSLVLTI 420 KQQIKNVSSV KLGILSSPQV LGGDPLNWNF ESPPSRITLL TQKEEFMPEP QQLSVENERN 480 DVPFSKDESE VAYVEHMKDD NLEIELMDNA AAGTSQSIVP CLNAGIEDVD IKKGKTETKI 540 HHNKSNTPKR KKKKTERSIS VEEISKHYGK PMEEAAVNLH GILSSPITLL TEKEEFLPEP 600 QQLSVENERN DVPFSKDKSE VAYVEHMKDD NLEIELMDNA AAGTSQIIVP CLNAGIEDVD 660 INKGKTETKI HHDKSNTPKR KKKKTEMSIS VKEISKHYGK PMEEAAGNLG VSRSTLKRIC 720 RSLDIPRWPY KNDKSNYVLK SNETDAVIRA SQGTPIPVLG TSTEPSGTTN IPYLPVTLTE 780 HGKQKSSIVV SHDEEQKIPP VGSAKPETTI REQHIVNTLA TNTLMIKATY KEDIVKFPFM 840 LSDGLVKLEE LVATRFQLSP GSFSLKYEDA DGDMILLTCD LDLIELVADS RQPDNQTDTQ 900 YEAKKKSLHS VRRNLKGEN

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MQRNNECGSS KDQASSGSNV LNALNSKYRC LSEPQTSASR PDNYNGCRNY LTHLWVFGSR  60
EADVELLPSS FSKLLEDENS IDPQRVKDKI THAISALSLR DPHVLVQFWS LTTVQKRCFL  120
TTLDQPFGLG VVDEGLYLYR QESERRNFVV NGDHKEQLAP PGRVYRQKLP EWSLDVQTLP  180
TIDLDVSYNI YGYIDLPVFE PDNGSCVGVL EIVSSSSYVD YAFEVQEVSR ALKEHNLKSP  240
MAFEDPRFYV RDERRQHELD EIYSMLKTVC DLQKLPLAQM WALSGYSSIV VNSGNLESSC  300
SSFNKNCIGK VCMSTSDLPF YVRDLSTWGF REACRERHLD KSQGIVGKSL TSRGLCFCKD  360
VTKLGKEEYP MASYARGYEI TSCLAIYLIS FESDIEYVIE FVLPPHNANE ADLQSLVLTI  420
KQQIKNVSSV KLGILSSPQV LGGDPLNWNF ESPPSRITLL TQKEEFMPEP QQLSVENERN  480
DVPFSKDESE VAYVEHMKDD NLEIELMDNA AAGTSQSIVP CLNAGIEDVD IKKGKTETKI  540
HHNKSNTPKR KKKKTERSIS VEEISKHYGK PMEEAAVNLH GILSSPITLL TEKEEFLPEP  600
QQLSVENERN DVPFSKDKSE VAYVEHMKDD NLEIELMDNA AAGTSQIIVP CLNAGIEDVD  660
INKGKTETKI HHDKSNTPKR KKKKTEMSIS VKEISKHYGK PMEEAAGNLG VSRSTLKRIC  720
RSLDIPRWPY KNDKSNYVLK SNETDAVIRA SQGTPIPVLG TSTEPSGTTN IPYLPVTLTE  780
HGKQKSSIVV SHDEEQKIPP VGSAKPETTI REQHIVNTLA TNTLMIKATY KEDIVKFPFM  840
LSDGLVKLEE LVATRFQLSP GSFSLKYEDA DGDMILLTCD LDLIELVADS RQPDNQTDTQ  900
YEAKKKSLHS VRRNLKGEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-85	Nin-like family protein