PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012158.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 21452.3 Da PI: 7.8435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.7e-13 | 80 | 122 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT +Ed ll+++vk++ tW+ Ia+ ++ gR + c +rw kyl Cse_sc012158.1_g030.1 80 VWTNDEDNLLIELVKKYN--TWREIAEQIP-GRADVVCCHRWVKYL 122 6****************7..7*********.*************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.9e-14 | 128 | 174 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +v+ ++ G+ tW++Ia+ ++ gR+ qc +rw ++l Cse_sc012158.1_g030.1 128 KGPWTKEEDDHIVKTFEANGKMTWSKIANDLP-GRSSIQCEERWDNHL 174 79******************************.***********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MSAPVDVDVV VGKAPNHDDI KVMEGDVGMK SEPHSVELKK EAGSTSSSVS CCIFSSCDGN 60 TLRSHRDRGN IARTRSPSVV WTNDEDNLLI ELVKKYNTWR EIAEQIPGRA DVVCCHRWVK 120 YLNPEINKGP WTKEEDDHIV KTFEANGKMT WSKIANDLPG RSSIQCEERW DNHLDPAIKR 180 KKGVKKRNPL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 9e-31 | MYB family protein |