PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012035.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 676aa MW: 78980.5 Da PI: 9.4534

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012035.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.6	7.6e-17	2	68	25	90
FAR1 25 ngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ei+++++vC+keg+++ +++ +++++++r rtgC+a+l+++ +kdg+w+v+ ++ HnH+l+ Cse_sc012035.1_g020.1 2 TNEIYRKWYVCNKEGFKSVKDDGtSVDTKKRRRDVRTGCQARLRITITKDGRWCVDFFDDTHNHDLS 68 5789***********9888775788999999******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MTNEIYRKWY VCNKEGFKSV KDDGTSVDTK KRRRDVRTGC QARLRITITK DGRWCVDFFD 60 DTHNHDLSTT PTKVMKHCSH GKFHRSMACK SLMLELGRSG MRPCHVKKAV NAMKPPYVAD 120 VTSKQCSDIL SEQRKEYKGK EFYGLIKHFQ DKASVDINQY FKIDLNSDGS PRNIFWADGR 180 SRDAYIKFGD VLVFDVTYLT NKFKFPFAPF VGVNHHGQSI LIGAALLENE KEETFEWLFE 240 QFLVCMFDKY PASIITDQDK AICNAIHKVF PNTRHRYCSW HIKKHQLEHL RPFKARYSDF 300 NESYKKWVKS DTIEEFETQW DVIRDKYNLE SSNWMMDTYD QRKYWVWSFL KDGFFAGMTT 360 SGRCESIHSF FDGFVNSNTM LNEFVIQYDK VVNSRRAAEE DEDFKTMNSR AVLSSVHLIE 420 AKAGKCYTRK IFENFEKEWK EATNNLTHVT LNKSLEQVTY SVGQLNVEKK YWRTVKFNLL 480 NKVDVTFSCA MFETYGLLCK HILYVMKKKH VETLPDQYIL PRWTLDSRYK VGNDSIGIKE 540 INNESEVSAL TLWCVYSNST KAIKQAKDCP SEITRLNTML VKFLEDQMSR KKEKEPQNVY 600 EDNFVGVSKV DKMPQISIRD PVVLPRRKGR PKIATRIKPP IELQGNKKKT CSYCHGLGHN 660 ITGCLKKKID DLQGKK

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MTNEIYRKWY VCNKEGFKSV KDDGTSVDTK KRRRDVRTGC QARLRITITK DGRWCVDFFD  60
DTHNHDLSTT PTKVMKHCSH GKFHRSMACK SLMLELGRSG MRPCHVKKAV NAMKPPYVAD  120
VTSKQCSDIL SEQRKEYKGK EFYGLIKHFQ DKASVDINQY FKIDLNSDGS PRNIFWADGR  180
SRDAYIKFGD VLVFDVTYLT NKFKFPFAPF VGVNHHGQSI LIGAALLENE KEETFEWLFE  240
QFLVCMFDKY PASIITDQDK AICNAIHKVF PNTRHRYCSW HIKKHQLEHL RPFKARYSDF  300
NESYKKWVKS DTIEEFETQW DVIRDKYNLE SSNWMMDTYD QRKYWVWSFL KDGFFAGMTT  360
SGRCESIHSF FDGFVNSNTM LNEFVIQYDK VVNSRRAAEE DEDFKTMNSR AVLSSVHLIE  420
AKAGKCYTRK IFENFEKEWK EATNNLTHVT LNKSLEQVTY SVGQLNVEKK YWRTVKFNLL  480
NKVDVTFSCA MFETYGLLCK HILYVMKKKH VETLPDQYIL PRWTLDSRYK VGNDSIGIKE  540
INNESEVSAL TLWCVYSNST KAIKQAKDCP SEITRLNTML VKFLEDQMSR KKEKEPQNVY  600
EDNFVGVSKV DKMPQISIRD PVVLPRRKGR PKIATRIKPP IELQGNKKKT CSYCHGLGHN  660
ITGCLKKKID DLQGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-105	FAR1 family protein