PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011932.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 545aa MW: 62901.9 Da PI: 9.3452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011932.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.5e-22	73	194	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................tekerrtra 56 +fY+eYA+e GF+vr+ +kk+k+++ t + fvCs+eg + k++ ++ +rr+ra Cse_sc011932.1_g010.1 73 NFYKEYAREGGFEVRRGGQKKRKTKEDPTLKYFVCSREGVKPAPKSDkkaadtegvkpapksdkkaadtsksdniqivkEVIRRRRRA 160 6************************************98877766789***********************98889999* PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++r+gCka l+++ ++d+k++v+++ ++HnH+l+ Cse_sc011932.1_g010.1 161 SQRCGCKALLRLRHTEDNKYVVYTFFEKHNHPLV 194 ********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSNITNDNDS MQGQIESPPS CNIVQDDIVV DDQSVPLVGS YQRTPPGSKF WIPEAKNKPV 60 EGTLFDTIDL ALNFYKEYAR EGGFEVRRGG QKKRKTKEDP TLKYFVCSRE GVKPAPKSDK 120 KAADTEGVKP APKSDKKAAD TSKSDNIQIV KEVIRRRRRA SQRCGCKALL RLRHTEDNKY 180 VVYTFFEKHN HPLVQENDYK YLRAARKLSF PKQQLLYQLS NANLGPTRAW KVFKEMFGGF 240 ENIGFTDVEC RNYRRGLNMF IGERDAQMVV EKLLSRKEFS DFSVEYKQDK KTKSLVGLFW 300 ADEQAKRHYA AFGDVVSFDA TFRSNRYNMV LVPFTGIDNH NRCIIFGAAL LDNESAKRYT 360 WLLKRFLKIF GTAPKVVVTD QDPAMKIAIE EKFPDTRHRL CMWHIMQKLT GKDEIFSSLM 420 HCCSLSVTES DTFSTFVIRD TEADYKIKDS QFQVKYEVKY VPSQCSFQCS CLRYECYGLL 480 CRHIFYVMRM SKVDHFPKHY LQKRWSKNAM HLIHVAAPKD AASSSNSEAC VDSILRDIYN 540 NVEVS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSNITNDNDS MQGQIESPPS CNIVQDDIVV DDQSVPLVGS YQRTPPGSKF WIPEAKNKPV  60
EGTLFDTIDL ALNFYKEYAR EGGFEVRRGG QKKRKTKEDP TLKYFVCSRE GVKPAPKSDK  120
KAADTEGVKP APKSDKKAAD TSKSDNIQIV KEVIRRRRRA SQRCGCKALL RLRHTEDNKY  180
VVYTFFEKHN HPLVQENDYK YLRAARKLSF PKQQLLYQLS NANLGPTRAW KVFKEMFGGF  240
ENIGFTDVEC RNYRRGLNMF IGERDAQMVV EKLLSRKEFS DFSVEYKQDK KTKSLVGLFW  300
ADEQAKRHYA AFGDVVSFDA TFRSNRYNMV LVPFTGIDNH NRCIIFGAAL LDNESAKRYT  360
WLLKRFLKIF GTAPKVVVTD QDPAMKIAIE EKFPDTRHRL CMWHIMQKLT GKDEIFSSLM  420
HCCSLSVTES DTFSTFVIRD TEADYKIKDS QFQVKYEVKY VPSQCSFQCS CLRYECYGLL  480
CRHIFYVMRM SKVDHFPKHY LQKRWSKNAM HLIHVAAPKD AASSSNSEAC VDSILRDIYN  540
NVEVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-53	FAR1 family protein