PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011907.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 684aa MW: 78119.2 Da PI: 5.4405

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011907.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av+++G+++W++I++ + ++++kqck rw+++l Cse_sc011907.1_g030.1 8 GVWNNTEDEILKAAVTKYGSKNWSRISSLLV-RKSAKQCKARWYQWL 53 78***************************.***********97 PP
2	Myb_DNA-binding	36.1	1.5e-11	61	102	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eEde+l+++ k++++ W+tIa ++g Rt+ qc +++ + Cse_sc011907.1_g030.1 61 EWTREEDEKLLHLAKLMPTQ-WRTIATMVG--RTPSQCLEHYERL 102 6***************99.****8..********876 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MRIMMKGGVW NNTEDEILKA AVTKYGSKNW SRISSLLVRK SAKQCKARWY QWLDPDIKKI 60 EWTREEDEKL LHLAKLMPTQ WRTIATMVGR TPSQCLEHYE RLLDSACESY EPGDDPRNLR 120 PGEIDPNPES KPARPDQVDI DEDEKEMLSE ARARLVNTRG KKAKRKAREK QLEEARRLAS 180 LQKRRELKAA GIDNRRRKRK REGIDYNDEI PFEERPPPGF YDVTDESFSA EQPKFPTSIE 240 ELEGERRSDK EARLRKQDVS RNKTAQRQEG PSAILHANKL NDPETVTKRP KMNLPPPQVS 300 DYELEHIVKF GLPALSEELS EGSGATRALL ADYTRTPRHG MIPLRTPAGK LDPIMMEAEN 360 QARLRLSQTP LLGGENPDLH PSNYSGVTPK KKGIQAPKDI VTPSVMSTAG ALGMAPRDAY 420 SFGVTPKGTP IRDELHINED MEMHDTAKLE RVRQADMRRN LRSSLTGLPQ PKNEYLITVQ 480 HAPEDDEEPE EKMEEDMSDR IAWEKVEEEF DEDELKEADQ MIKEEAKFLR VAMGHEDEDI 540 DEYGLSSVAG NTEKVAAFQK VVDIVKKRMD DDTKKAVCLE QKIKLRTDGY QMRAAKLGSQ 600 VETTFKQIDT AATEYECLQA LKKQELLAAS NRINSISEDI QKQKELEKRL QNRYGDLLFR 660 ATVPEQVEEA NQITESSEMA NLTG

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MRIMMKGGVW NNTEDEILKA AVTKYGSKNW SRISSLLVRK SAKQCKARWY QWLDPDIKKI  60
EWTREEDEKL LHLAKLMPTQ WRTIATMVGR TPSQCLEHYE RLLDSACESY EPGDDPRNLR  120
PGEIDPNPES KPARPDQVDI DEDEKEMLSE ARARLVNTRG KKAKRKAREK QLEEARRLAS  180
LQKRRELKAA GIDNRRRKRK REGIDYNDEI PFEERPPPGF YDVTDESFSA EQPKFPTSIE  240
ELEGERRSDK EARLRKQDVS RNKTAQRQEG PSAILHANKL NDPETVTKRP KMNLPPPQVS  300
DYELEHIVKF GLPALSEELS EGSGATRALL ADYTRTPRHG MIPLRTPAGK LDPIMMEAEN  360
QARLRLSQTP LLGGENPDLH PSNYSGVTPK KKGIQAPKDI VTPSVMSTAG ALGMAPRDAY  420
SFGVTPKGTP IRDELHINED MEMHDTAKLE RVRQADMRRN LRSSLTGLPQ PKNEYLITVQ  480
HAPEDDEEPE EKMEEDMSDR IAWEKVEEEF DEDELKEADQ MIKEEAKFLR VAMGHEDEDI  540
DEYGLSSVAG NTEKVAAFQK VVDIVKKRMD DDTKKAVCLE QKIKLRTDGY QMRAAKLGSQ  600
VETTFKQIDT AATEYECLQA LKKQELLAAS NRINSISEDI QKQKELEKRL QNRYGDLLFR  660
ATVPEQVEEA NQITESSEMA NLTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	201	KRRELKAAGIDNRRRKRKR
2	194	201	NRRRKRKR
3	195	201	RRRKRKR
4	195	202	RRRKRKRE
5	196	201	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein