PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc011871.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22260 Da PI: 9.9757 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.3 | 1.7e-17 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri+n++ r vt skR ng++KKA EL +LC++ avi f gk Cse_sc011871.1_g010.1 15 KRINNERERAVTMSKRHNGLFKKACELATLCGVHLAVIFFTIGGK 59 79************************************9976665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence |
MARLTKGGRK KIEIKRINNE RERAVTMSKR HNGLFKKACE LATLCGVHLA VIFFTIGGKS 60 LSFGSPSICS VLKKFMKTNE VDEQSENYIT RLENSAKESR LQELNKNYNE ISEKLINERK 120 RGQVLEVILK GSFGGKTSGE CISGLVIEKL VKLKFCVIEL EKILKVKCES RSACSSNNDD 180 YKVDLSKMEV SKDYLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-19 | M-type_MADS family protein |