PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011737.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 167aa    MW: 18869.3 Da    PI: 9.3405
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011737.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-18751145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           k+ien++  +vtf+kRr  ++KKA+ELS+LC+++ aviifs++ k
  Cse_sc011737.1_g040.1  7 KKIENERSLSVTFAKRRPSVIKKANELSTLCGVQSAVIIFSPNEK 51
                           68***************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
RKKIEKKKIE NERSLSVTFA KRRPSVIKKA NELSTLCGVQ SAVIIFSPNE KSVYSFGDPS  60
LEVLVSGYLE HYSGAQSSQT SGLVEQFQNP HTENFNTQLN SMLARLESEQ NITENLNKTK  120
KENQGKNWYN APIENLGIEE LTVLKNATLE VKKQADQGIM EFGGYRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-22M-type_MADS family protein