PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011691.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 469aa MW: 54044.3 Da PI: 9.8808

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011691.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	80	131	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h+ +Er RR++i + ++ L llP + ++K s + +Av+YIk++q Cse_sc011691.1_g030.1 80 KLVHKVVERERRKNIGKLYASLGALLPYEF--IKGKRSILDRTHQAVNYIKHMQ 131 667***********************65..*******************9 PP
2	HLH	33.2	9.5e-11	303	354	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h e E++RR+++ + ++ Lr+llP ++ ++ s e + +Av YIk+L+ Cse_sc011691.1_g030.1 303 KLVHRETEKKRRQEMSKLYSSLRSLLPLQF--IKGTRSMCEHVNQAVSYIKHLE 354 667***********************75..9999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MISLHQSGEL VYHEIPSTIS FRNQQDLMVN LHDRVNTDGN TNLAGSNTRK RGRDHSSYKA 60 NSGIIDHGVR DNKDEHMQKK LVHKVVERER RKNIGKLYAS LGALLPYEFI KGKRSILDRT 120 HQAVNYIKHM QEKIEALSIK RDQLKKLVSM SFKENIMNKV SISSCDGRIV EIQINCCSIE 180 DGFHLSEVLK ALVEEGLHII NYTFTNRNKR LLHSIQSEAC DTTLTDLSRL QQRLVSITNS 240 RQIFTYCSEI SFSFPSTLHQ QDLPNPDNRK PAGRKRSCYN LQPQEDHLVI MDNDVDKENK 300 KKKLVHRETE KKRRQEMSKL YSSLRSLLPL QFIKGTRSMC EHVNQAVSYI KHLEEKIKEL 360 KIKRDKLKKM CNVVTDGKVV LQKNDKSERV MVECSRNPIT VTVSCSEGGI EILVKSFINE 420 NKGLQISRVL KTLVQEGIDV ISCNSTKVND RLLIYTIHSK VFFSSLYCF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MISLHQSGEL VYHEIPSTIS FRNQQDLMVN LHDRVNTDGN TNLAGSNTRK RGRDHSSYKA  60
NSGIIDHGVR DNKDEHMQKK LVHKVVERER RKNIGKLYAS LGALLPYEFI KGKRSILDRT  120
HQAVNYIKHM QEKIEALSIK RDQLKKLVSM SFKENIMNKV SISSCDGRIV EIQINCCSIE  180
DGFHLSEVLK ALVEEGLHII NYTFTNRNKR LLHSIQSEAC DTTLTDLSRL QQRLVSITNS  240
RQIFTYCSEI SFSFPSTLHQ QDLPNPDNRK PAGRKRSCYN LQPQEDHLVI MDNDVDKENK  300
KKKLVHRETE KKRRQEMSKL YSSLRSLLPL QFIKGTRSMC EHVNQAVSYI KHLEEKIKEL  360
KIKRDKLKKM CNVVTDGKVV LQKNDKSERV MVECSRNPIT VTVSCSEGGI EILVKSFINE  420
NKGLQISRVL KTLVQEGIDV ISCNSTKVND RLLIYTIHSK VFFSSLYCF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	314	KKKKLVHRETEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	7e-30	bHLH family protein