PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011669.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 330aa    MW: 37588.6 Da    PI: 6.6685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011669.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            y   +C+++ +tG+C yGd+CkF+H+
  Cse_sc011669.1_g020.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                            67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MSESNDNEQP QQQKPEQVCS FFRKPSKNKN IRKRANDDDD NEQEEPSLVL PKKKTVAADN  60
KLHFSTGSSK RSLEQEDVDT KATMFQFESS KEIQVQNDSR ATATLETETD FSRDSRAIRE  120
RVLKQANEAL KGKGGGNVGN SGNDEKLYKG IHGYTDYKAG FRREQTVASE KAGGSHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQMER DWDEAEKVRK  240
RKLALKGGDD DDEDEEEEIE DDEDGLPFAC FICRQPFVDP VVTKCKHYFC EHCALKHHTK  300
KKKCFVCNQP TLGIFNTAHE IRKRTAAEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-158C3H family protein