PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc011400.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | bHLH | ||||||||
Protein Properties | Length: 471aa MW: 51530 Da PI: 8.0117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.6e-16 | 291 | 337 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Cse_sc011400.1_g020.1 291 VHNQSERKRRDKINQKMKTLQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 337 6*************************8.....6******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence |
MNQCVPSWDV DHENNSRNNS NPARNKASLP PSNSISSTLD VPTLDYEVAE LTWKNGQLAM 60 HGLGPPRVVN KPHANTANLT KYTWDKPHAA ETLEAIVNQA TLQQKQKSHI NIYSDDLVPW 120 LDHHHGSGVT AGTISASGTV DALVPNSNTQ PHALMCTNGV PTNCSTRVGS CNGDQSWYGD 180 HMTAQGGAAT HEWSSCRDHS GSGSATFGME SSRQLTAETC ERELGLKGLT STSTGSPENT 240 VSGKQQSTKS TSPDEHDSVC HSRPQKNEVD EKKKGKGKSS ISTKRSRAAA VHNQSERKRR 300 DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQGQI NMINRMNMSP MMMPLAMQQQ 360 QLQMAMMNPM GLGMGMGMGM GMPGIMDLNS ISGNRPNIPG MPPVFHPSNF MQPTMASWDM 420 NTTCDQVPNH NDPMAAFLAC QSQPMTMEGY SRMAAMFQQM QNQPTYPGLK N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 301 | ERKRRD |
2 | 297 | 302 | RKRRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-81 | bHLH family protein |