PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011233.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family BBR-BPC
Protein Properties Length: 285aa    MW: 32184.4 Da    PI: 8.6596
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011233.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind306.97.3e-94928526301
              GAGA_bind  26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksids 110
                            +  m+++aerda+irernlal e+k a+aerd a lqrd+alaern  + erd+++++l ++ n ++   +++p   + ++    + s
  Cse_sc011233.1_g010.1   9 KTFMAIMAERDAAIRERNLALDERKRAFAERDLAMLQRDAALAERNSVMQERDEAIATLRFRGNFMNeniMSTPEVPENIPS---CGS 93 
                            3579**********************************************************99888444334443333333...333 PP

              GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk...vkkesaderskaekksid 195
                             +  s+ +  d+ +e++e ++++ +p++ a + +   k++k r+ ++k+k++k+   k+  +++ k+    + es+ ++s+ e  + +
  Cse_sc011233.1_g010.1  94 KRGFSD-EEMDHIFEMPEDSCTKREPLKMADTYQVPPKNTKPRKVTRKAKSPKKGGRKRGDSVKMKHdfgGNDESS-DDSQLEVWKDE 179
                            333233.334666777888888888888777777777777767777777777766555544333332111344444.44555555569 PP

              GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                            l+ln+v++Des++PvPvCsCtGa++ CY+WG+GGWqSaCCttt+S+yPLP+ +++r +R++grKmS+gaf+klL +L++eGydls  +
  Cse_sc011233.1_g010.1 180 LGLNQVNFDESAMPVPVCSCTGAPQPCYRWGSGGWQSACCTTTMSMYPLPQLANKRYSRVGGRKMSGGAFTKLLTRLSSEGYDLSSQL 267
                            **************************************************************************************** PP

              GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                            DLkdhWAkHGtn++ t++
  Cse_sc011233.1_g010.1 268 DLKDHWAKHGTNRYSTVK 285
                            ****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MDHNHLSIKT FMAIMAERDA AIRERNLALD ERKRAFAERD LAMLQRDAAL AERNSVMQER  60
DEAIATLRFR GNFMNENIMS TPEVPENIPS CGSKRGFSDE EMDHIFEMPE DSCTKREPLK  120
MADTYQVPPK NTKPRKVTRK AKSPKKGGRK RGDSVKMKHD FGGNDESSDD SQLEVWKDEL  180
GLNQVNFDES AMPVPVCSCT GAPQPCYRWG SGGWQSACCT TTMSMYPLPQ LANKRYSRVG  240
GRKMSGGAFT KLLTRLSSEG YDLSSQLDLK DHWAKHGTNR YSTVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-84BBR-BPC family protein