PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc011162.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 412aa    MW: 46151.7 Da    PI: 4.9315
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc011162.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.83.8e-072022371045
                 RWP-RK  10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 
                            l  yF l+   AAkeL +   +   +CR+ GI+ WP
  Cse_sc011162.1_g050.1 202 LVPYFGLSSVVAAKELRLKKGTFRNTCRRAGIPEWP 237
                            6679******************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MILDICVPTP QGRKQQIKST IRALPLYGHN VLVQFWAATK IGKTVLLTTT GQPFGLSGTN  60
EELELYRQGC LDHKLYVHPE KRIAVGLPGR VYLNSTPEQT ENVHNIPNDQ RPPCVDAIFT  120
RIWGSFAFPV IVDGQCVGVL DFVMDTPTIS YDSIIREVYN GLQQAGLQSS IKTDWPKTCS  180
NLNSQNRIRR TQSFSLSHYF RLVPYFGLSS VVAAKELRLK KGTFRNTCRR AGIPEWPGIP  240
STNTRASSAP DQTRVSQTVS ETSSIGTLLD DSISSSRDEG TSEWSVEQTP TPIASAPENQ  300
ISQTVPETTP NADDFYSCWD RGVSEVSVEL NMPTNTSSLQ TQINQIASDN SFTDALLESE  360
YPDFMPERHE PVYQGNETTV IENLDHDKFM EHIEFFWKDP PVTSDKIWAS CY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-17Nin-like family protein