PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc011012.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 409aa MW: 47972.6 Da PI: 9.1106

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc011012.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.1	5.7e-08	34	81	44	90
FAR1 44 ekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++++e++ rt++ +rtgC a++k k++ + k e++++e++HnH++ Cse_sc011012.1_g050.1 34 SEETSETQIRTSSISRTGCMARVKFKLNAnHTKDELYDFEENHNHTFI 81 23336788899***************98999**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MKTMLRKQDS VLGCQHKILR KEGLPKGVNK DTMSEETSET QIRTSSISRT GCMARVKFKL 60 NANHTKDELY DFEENHNHTF IPVVYRNLSK KRKKMSHKQQ IYMQQLGGTN IGATRAHHLY 120 AATNGGYDSV DATETEFRNN KRDLNNHIGD SDAQMLITKM ENRKKHVANF SFEYAVEDSQ 180 LTLLFWADEM AKYNYREFGD TISFDATFRK INPEEFVQKW LALINEFNLP ENKWLSYMFE 240 IRDRWIPAYF KDVELCGLMR TTSRSKSENS FFSNFTSSGS TLLNVMMGFE SAMERQRPKQ 300 EVLDDQTIQN FPRYKTKLAI EHHAAKIYTS TIFLLIQDEI NSAIYDCHQV SEVIEDGIEV 360 LTIKEIREII PRKSKKKYNF EEIEVQNRRD MTKKELRFKV FSLLKNSNL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MKTMLRKQDS VLGCQHKILR KEGLPKGVNK DTMSEETSET QIRTSSISRT GCMARVKFKL  60
NANHTKDELY DFEENHNHTF IPVVYRNLSK KRKKMSHKQQ IYMQQLGGTN IGATRAHHLY  120
AATNGGYDSV DATETEFRNN KRDLNNHIGD SDAQMLITKM ENRKKHVANF SFEYAVEDSQ  180
LTLLFWADEM AKYNYREFGD TISFDATFRK INPEEFVQKW LALINEFNLP ENKWLSYMFE  240
IRDRWIPAYF KDVELCGLMR TTSRSKSENS FFSNFTSSGS TLLNVMMGFE SAMERQRPKQ  300
EVLDDQTIQN FPRYKTKLAI EHHAAKIYTS TIFLLIQDEI NSAIYDCHQV SEVIEDGIEV  360
LTIKEIREII PRKSKKKYNF EEIEVQNRRD MTKKELRFKV FSLLKNSNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-15	FAR1 family protein