PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc010557.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22958.7 Da PI: 10.1306 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.7e-21 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e +sn vtfskRr g++KKA+EL++LC+ae+a+++fs+ k++ + Cse_sc010557.1_g020.1 18 EKESNLMVTFSKRRSGLFKKASELCILCGAEIAIVVFSPGKKVFSF 63 788999*********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MTPKKSKGRQ KIQMMKMEKE SNLMVTFSKR RSGLFKKASE LCILCGAEIA IVVFSPGKKV 60 FSFGHPSVET IVDRFFTHNP PPNSSTSQFV EAHRNANIHE LNRQLAYDIS QLEDQKIKGE 120 QFSMMRKASQ DNHWWEAPIE SLGLGELERL NIIMGLLKQN IEEQKKRHLV EAANPMSIVP 180 ISSPMGISMT PHGLVLGYGH LSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-57 | M-type_MADS family protein |