PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009970.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 458aa MW: 51518.4 Da PI: 6.3319

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009970.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.1	3.2e-16	134	183	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+ +lg f+t +Aa+a+++a+ k++g Cse_sc009970.1_g010.1 134 SEYRGVTFYRRTGRWESHIWD------CgKQLYLGGFDTSHDAARAYDRAAIKFRG 183 569****************......55***********************98 PP
2	AP2	43.1	1.1e-13	226	276	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k +grW+A+ p g +k+++lg ++ + eAa+a+++a+ + +g Cse_sc009970.1_g010.1 226 SKYRGVTLHK-SGRWEARMGQPL--G-KKYVYLGLYDNEVEAARAYDQAAINCNG 276 89******.7**66642..2.6******99********88765 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MLDLNVFSVM KTTEIHSVTS SDVLNVIDDD DSVSYSVNNH NNKTVNHIDM LSKMCELKDE 60 HESDRSDVSL ITRQLFPVEA GEEEEEEEVG ERSISSSPIS SDWLNLKVLE YQQPAMLQPV 120 KPRKSRRGPP SRSSEYRGVT FYRRTGRWES HIWDCGKQLY LGGFDTSHDA ARAYDRAAIK 180 FRGPDADINF DVKEYEEDME QVKNLSKEEF IHILRRQSSG FSRGSSKYRG VTLHKSGRWE 240 ARMGQPLGKK YVYLGLYDNE VEAARAYDQA AINCNGREAV TNFEPSTYGM TYKNLARRDE 300 ASGHNLDLKL WVSPTIQNVD RGSITGVFPS GKRHKVESVA PISMGGESYY DPTAIPQPYP 360 WPSMYSGRIP SYEEWKTGMK SAGYIPSSPG VSNAAWQMQM ATAHHAVKPI PVASNAAPSG 420 FTSFTSFMDP SFLSNVNMQN KTSTHDTFNP MPTGTSQY

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MLDLNVFSVM KTTEIHSVTS SDVLNVIDDD DSVSYSVNNH NNKTVNHIDM LSKMCELKDE  60
HESDRSDVSL ITRQLFPVEA GEEEEEEEVG ERSISSSPIS SDWLNLKVLE YQQPAMLQPV  120
KPRKSRRGPP SRSSEYRGVT FYRRTGRWES HIWDCGKQLY LGGFDTSHDA ARAYDRAAIK  180
FRGPDADINF DVKEYEEDME QVKNLSKEEF IHILRRQSSG FSRGSSKYRG VTLHKSGRWE  240
ARMGQPLGKK YVYLGLYDNE VEAARAYDQA AINCNGREAV TNFEPSTYGM TYKNLARRDE  300
ASGHNLDLKL WVSPTIQNVD RGSITGVFPS GKRHKVESVA PISMGGESYY DPTAIPQPYP  360
WPSMYSGRIP SYEEWKTGMK SAGYIPSSPG VSNAAWQMQM ATAHHAVKPI PVASNAAPSG  420
FTSFTSFMDP SFLSNVNMQN KTSTHDTFNP MPTGTSQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-74	AP2 family protein