PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009795.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 464aa MW: 51587.1 Da PI: 8.0356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009795.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	240	260	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G+C+ Gd C FaHg Cse_sc009795.1_g040.1 240 PCPDFKK-GQCRQGDLCEFAHG 260 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MCSGHDKKDS VKVSRPDMSV SNLLDLAATN DLEGFKRLMD GVCWDVNGVG LWYGRQRGAK 60 RMLMEERTPL MIAATYGSLD VVKFIVSLSD VDVNRSCGTD KTTALHCAAS GGAVNAFDVV 120 KVLLVSGADA ALVDANGCRA IDAVSVPPNL PRLKIALEKL FQNGGTGVEL ACEKKEFPIV 180 PFSPDVKSDV YLTDEFRMFS FKIRPCSRAY SHDWTECPFI HPGESARRRD PRRIHYSCVP 240 CPDFKKGQCR QGDLCEFAHG VFECWLHPAQ YRTRLCKDGT FCARRVCFFA HTPDQLRPLY 300 VSTGSALPSP RGSPPPMLHL PGGNPQANRM FLDLEMHRQQ QQQMTAFSPS NRHMVLSPAH 360 PYSPKGFFDY RGSYGLPSPR IASPQSHMAT FSPHVSKGNM DWSVNRLPQQ STELDVSWVE 420 SLVKEPPPLL APNGSEMKPP ETEKIDHASL STWLENMKMN QIVA

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MCSGHDKKDS VKVSRPDMSV SNLLDLAATN DLEGFKRLMD GVCWDVNGVG LWYGRQRGAK  60
RMLMEERTPL MIAATYGSLD VVKFIVSLSD VDVNRSCGTD KTTALHCAAS GGAVNAFDVV  120
KVLLVSGADA ALVDANGCRA IDAVSVPPNL PRLKIALEKL FQNGGTGVEL ACEKKEFPIV  180
PFSPDVKSDV YLTDEFRMFS FKIRPCSRAY SHDWTECPFI HPGESARRRD PRRIHYSCVP  240
CPDFKKGQCR QGDLCEFAHG VFECWLHPAQ YRTRLCKDGT FCARRVCFFA HTPDQLRPLY  300
VSTGSALPSP RGSPPPMLHL PGGNPQANRM FLDLEMHRQQ QQQMTAFSPS NRHMVLSPAH  360
PYSPKGFFDY RGSYGLPSPR IASPQSHMAT FSPHVSKGNM DWSVNRLPQQ STELDVSWVE  420
SLVKEPPPLL APNGSEMKPP ETEKIDHASL STWLENMKMN QIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-145	C3H family protein