PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009760.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 383aa    MW: 43250.3 Da    PI: 6.7368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009760.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS234.25.8e-728437419320
                   GRAS  19 laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
                            +   +Larl+++ sp g+p++ +a+yf+eAL    +++ s++  +l+ + + + + + ++ a+k fse+sP+++f+++ +Nqa+le++
  Cse_sc009760.1_g060.1  84 NCLGILARLNHQISPIGKPFEWAAFYFKEALTLLANSNISNINPQLTQNVS-PFSLIYKIGAYKSFSEISPFVQFANFSCNQALLESL 170
                            56679***************************9999966666655533333.345999****************************** PP

                   GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                            +g +++HiiDfdi++G+QW +L+q+La R++g  sl+iT+++sp ++++ +l  t+e+L +fA+e++v fef+++  + + +   ++L
  Cse_sc009760.1_g060.1 171 NGYDHIHIIDFDIEYGGQWSSLMQELALRRNGISSLKITAFASPLTHDQLKLGLTRENLIHFANEINVGFEFEIVNID-VLAGASWSL 257
                            **************************************************************************7444.444457777 PP

                   GRAS 195 ..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                              +v+ +Ea+ Vnl +  h l ++++++++    vL++vk+l+Pk+vv v++ +d+++  + +++++al+ ys l++sl+a   ++ +
  Cse_sc009760.1_g060.1 258 pfSVSDKEAIGVNLPI--HVLSSHQTQIPN----VLRFVKNLNPKIVVSVDRGCDRTDLLYSNHLIHALQSYSNLLESLDAV-NANLD 338
                            447777********99..666544555555....*********************************************887.46669 PP

                   GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerle 320
                              +k+Er+l++++i+++v  +        e+ ++Wr+ + 
  Cse_sc009760.1_g060.1 339 SLQKIERFLVQPAIEKIVLGRYLY----PEKTQHWRSLFL 374
                            999****************99988....999999999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MDRNPENANC YNTVFTPLGK SKQISHLIDL YDKMKQDGPL PNIFTYNILI SSFGRAGRXA  60
VKIFEELENS DCKPDILSYN SLINCLGILA RLNHQISPIG KPFEWAAFYF KEALTLLANS  120
NISNINPQLT QNVSPFSLIY KIGAYKSFSE ISPFVQFANF SCNQALLESL NGYDHIHIID  180
FDIEYGGQWS SLMQELALRR NGISSLKITA FASPLTHDQL KLGLTRENLI HFANEINVGF  240
EFEIVNIDVL AGASWSLPFS VSDKEAIGVN LPIHVLSSHQ TQIPNVLRFV KNLNPKIVVS  300
VDRGCDRTDL LYSNHLIHAL QSYSNLLESL DAVNANLDSL QKIERFLVQP AIEKIVLGRY  360
LYPEKTQHWR SLFLSAWVVS PLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-105GRAS family protein