PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009736.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 229aa    MW: 25988.6 Da    PI: 6.6323
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009736.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.71.9e-54501531101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            qlk+ w++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa++tr
  Cse_sc009736.1_g060.1  50 QLKNLWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAATITR 137
                            89*****99999**************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            tdifdflvdivpr++l
  Cse_sc009736.1_g060.1 138 TDIFDFLVDIVPRKDL 153
                            *************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MMGNVPPASV GWSVPPSQTS GLTSPPAQLA QQQLAYHHIH QQQQQQLHQQ LKNLWANQYQ  60
EIEQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRSWNHTEE  120
NKRRTLQKND IAATITRTDI FDFLVDIVPR KDLKDEIIAS TVPRGGPLPV GAPTEALPYY  180
YMPPPQVGAS GMYMGKPVDP QALYGQQPRP YMAQPMWPQQ QQQEPHEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-77NF-YC family protein