PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009614.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 353aa    MW: 39627 Da    PI: 7.871
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009614.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.2e-093959526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            C f+++ GtC yG+rC++ H+
  Cse_sc009614.1_g020.1 39 VCTFYQK-GTCVYGSRCRYDHV 59
                           5******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MSLPGNRTRV LCKFFAHGAC LKGEHCEFSH DWKDPANNVC TFYQKGTCVY GSRCRYDHVK  60
VAQPKPQASG SSSTYPFQFG VSEPVSETAD PGVIGELSAS SRPYIASAWG EVTGENELLN  120
DVVVQARSTN PADIVMCSFA AAGNCPRGEN CPHVHGDLCP TCRKECLHPF RPDEREEHKK  180
MCEKKHKHLD ALKHSQEIEC SVCLERVLTK PTAAERKFGL LSECDHPFCI SCIRNWRSSS  240
PTSGMDVNSA LRSCPICRKL SYFVIPSVIW YASKDEKQEI VDSYKARLRS IDCRHFDFGN  300
GACPFGTSCF YKHAYRDGRL EETVLRHLGA EDGQTVIAKD IRLSDFLNRM RIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-150C3H family protein