PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009479.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family bHLH
Protein Properties Length: 244aa    MW: 28044.8 Da    PI: 4.8107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009479.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-145398555
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           + + Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L+
  Cse_sc009479.1_g020.1 53 NIMSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQHLH 98
                           5678*********************66......*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEDIGDDYKH YWETNMFLQT EEFDSWGGLE ETFSGYYDSS SPDGGQSSAA SKNIMSERNR  60
RKKLNDRLFA LRAVVPNISK MDKASIIKDA IDYIQHLHDQ ERAIQAEITE LESRKLESGV  120
FDYDQEMMFM STEKSKKKKI EQSFDSSESR TYPVEILELI VKHVGEKTVL VSLKCRKRRD  180
TMVKICEVFE TLKLNVVTAN VTAFSDTLFK TLFIQAEEEE IDLLKIQIHT AISALNDPPS  240
PMST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179LKCRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.17e-76bHLH family protein