PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009410.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 597aa MW: 69955.5 Da PI: 9.6367

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009410.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +Y++YA+++GFsvr s++++ ++g + ++ +vC+keg ++ +k+ +e++ rt++ +rtgC a++k k++ + k+e++++e++ Cse_sc009410.1_g010.1 1 MYEDYAEKAGFSVRLSTQNTL-KSGIVERKYLVCNKEGLPKGVNKDtmseetSETQIRTSSISRTGCMARVKFKLNAnHTKYELYDFEEN 89 6*************99998.7888*********999988888888778888899************999******* PP FAR1 85 HnHela 90 HnH++ Cse_sc009410.1_g010.1 90 HNHTFI 95 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MYEDYAEKAG FSVRLSTQNT LKSGIVERKY LVCNKEGLPK GVNKDTMSEE TSETQIRTSS 60 ISRTGCMARV KFKLNANHTK YELYDFEENH NHTFIPVVYR NLSKKRKKMS HKQQIYMQQL 120 GGTNIGATRA HHLYAATNGG YDSVDATETE FRNNKRDLNS HIGDSDAQML ITKMENRKKH 180 VPNFSFEYAV EDSQLTALFW ADEMAKYNYR EFGDTISFDA TFRTNKCFLK AFSKQPRLVV 240 TDQDPAMRKS VTAVFKESKH RLCMWHITNK LPFKICKTIL DNGTFRRRLH RLLWSLYIDP 300 EEFVERWLAL INEFNLQENK WLSDMYEIRD RWIPAYFKDV ELCGLMRTTS RSESENSFFS 360 NFTSSGSTLL NFMMGFESAM ERQRHKQEVL DDQTIQKVPR YKTKLAIERH AAKIYTRTIF 420 LLIQDEINSA VYNCHQVSEV IEDGIEVLTI KEFREIMPRK SKKKYNFEET EVQNRRDGTK 480 KELRFKVSTN MSDGTTSEVE EANPNAKPLT KKEMFNIQLG VEKPATNDVQ NLTKCKNKGD 540 PPAGQRMKGD LENVREYMKK RRRFCRKCQK MRRHDSRNCK RKENEVVTDS DSTVHSD

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MYEDYAEKAG FSVRLSTQNT LKSGIVERKY LVCNKEGLPK GVNKDTMSEE TSETQIRTSS  60
ISRTGCMARV KFKLNANHTK YELYDFEENH NHTFIPVVYR NLSKKRKKMS HKQQIYMQQL  120
GGTNIGATRA HHLYAATNGG YDSVDATETE FRNNKRDLNS HIGDSDAQML ITKMENRKKH  180
VPNFSFEYAV EDSQLTALFW ADEMAKYNYR EFGDTISFDA TFRTNKCFLK AFSKQPRLVV  240
TDQDPAMRKS VTAVFKESKH RLCMWHITNK LPFKICKTIL DNGTFRRRLH RLLWSLYIDP  300
EEFVERWLAL INEFNLQENK WLSDMYEIRD RWIPAYFKDV ELCGLMRTTS RSESENSFFS  360
NFTSSGSTLL NFMMGFESAM ERQRHKQEVL DDQTIQKVPR YKTKLAIERH AAKIYTRTIF  420
LLIQDEINSA VYNCHQVSEV IEDGIEVLTI KEFREIMPRK SKKKYNFEET EVQNRRDGTK  480
KELRFKVSTN MSDGTTSEVE EANPNAKPLT KKEMFNIQLG VEKPATNDVQ NLTKCKNKGD  540
PPAGQRMKGD LENVREYMKK RRRFCRKCQK MRRHDSRNCK RKENEVVTDS DSTVHSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	108	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-46	FAR1 family protein