PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009261.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 578aa MW: 66943.6 Da PI: 8.4359

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009261.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.9	2.5e-16	97	203	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++ Fs+rks+sk++ +ge+t++ vC++ gk++++ k + +++++++ + t+Cka+++ + Cse_sc009261.1_g050.1 97 DMYLEYALKARFSIRKSTSKRK--KGEVTHKYIVCNRAGKPRKTIVKdtlaqssqtvdnqkdgsnKPRQKHNSNYSVTDCKACVRFRA 182 58*************99988..999***********9988889********9987667777888899******* PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc009261.1_g050.1 183 IHgTSAFKLYEFVENHNHPLL 203 9****************95 PP
2	FAR1	22.5	3.8e-07	216	260	47	90
FAR1 47 ktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ +++r+++ + t+C+a+++ + + ++ +++++++++HnH+l Cse_sc009261.1_g050.1 216 NKPRQKRNSNYSATDCNACVRFRAIHgTSAFKLYEFVENHNHPLL 260 235788899999************9**************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MNSSIGNDDQ GEVNVKVVSP MQTEANVHLQ SSINDEQVNV NEDLSSGTND YSDLDDSELD 60 DERIPTPKGH KYWVPEVPAD EKPSEGNVFD TFDEAYDMYL EYALKARFSI RKSTSKRKKG 120 EVTHKYIVCN RAGKPRKTIV KDTLAQSSQT VDNQKDGSNK PRQKHNSNYS VTDCKACVRF 180 RAIHGTSAFK LYEFVENHNH PLLDENNTDL LKARRNKPRQ KRNSNYSATD CNACVRFRAI 240 HGTSAFKLYE FVENHNHPLL DENNTDLLKA RRKLDFSDKL FIHRASLSNL GPTKAHRLRV 300 AFMGSYQKVR GKPSDWKNFR RSVNKYIGPR DAKMLIDKMN DRKKHVPNFS FEYHTVDDVL 360 SRMFWADETM KCNYNEFGDV VSFDATYRTN RYQMIFVPFT GIDHNKKCVT FGAALISDET 420 IESYKWIPTS FKKAHVKEPI LAVTDQDPAL RTAIEVVFPE AHHRLCMWHI TQKLPGKICG 480 EVDSDSEFKK LFHKLIWNVF IEPSEFKERW HALIGMFNLS ENKWLSEMFK MRDLWIPAYF 540 KELPVTPPKY RSGTIVSLGY NVIAQSMDTE NDLYNETF

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MNSSIGNDDQ GEVNVKVVSP MQTEANVHLQ SSINDEQVNV NEDLSSGTND YSDLDDSELD  60
DERIPTPKGH KYWVPEVPAD EKPSEGNVFD TFDEAYDMYL EYALKARFSI RKSTSKRKKG  120
EVTHKYIVCN RAGKPRKTIV KDTLAQSSQT VDNQKDGSNK PRQKHNSNYS VTDCKACVRF  180
RAIHGTSAFK LYEFVENHNH PLLDENNTDL LKARRNKPRQ KRNSNYSATD CNACVRFRAI  240
HGTSAFKLYE FVENHNHPLL DENNTDLLKA RRKLDFSDKL FIHRASLSNL GPTKAHRLRV  300
AFMGSYQKVR GKPSDWKNFR RSVNKYIGPR DAKMLIDKMN DRKKHVPNFS FEYHTVDDVL  360
SRMFWADETM KCNYNEFGDV VSFDATYRTN RYQMIFVPFT GIDHNKKCVT FGAALISDET  420
IESYKWIPTS FKKAHVKEPI LAVTDQDPAL RTAIEVVFPE AHHRLCMWHI TQKLPGKICG  480
EVDSDSEFKK LFHKLIWNVF IEPSEFKERW HALIGMFNLS ENKWLSEMFK MRDLWIPAYF  540
KELPVTPPKY RSGTIVSLGY NVIAQSMDTE NDLYNETF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	141	KRKKGEVTHKYIVCNRAGKPRKTIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-47	FAR1 family protein