PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008758.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 707aa MW: 80097.6 Da PI: 9.296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008758.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.3	2.9e-19	58	152	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y++YA e+GF vr+ ++++ g +++++f Cskeg+++ + k+ ++ +r r+e rt+Ckak+ v ++ +k++v++ Cse_sc008758.1_g040.1 58 AYKDYAAEAGFIVRRGHQTND--GGIVINKEFLCSKEGTKKVQVKEfdslkdnygAKAVKRIRSEFRTNCKAKVYVIRS-GEKYRVKS 142 5*************98877..99****************9***999999999**********999.9*** PP FAR1 81 leleHnHela 90 +++eHnH ++ Cse_sc008758.1_g040.1 143 FVEEHNHGFF 152 *****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MPNIYQVTIF LILIFLLIPM HIVGVWFTCS TRLVSGIRDK VEIFKVLQFD SVEEAYNAYK 60 DYAAEAGFIV RRGHQTNDGG IVINKEFLCS KEGTKKVQVK EFDSLKDNYG AKAVKRIRSE 120 FRTNCKAKVY VIRSGEKYRV KSFVEEHNHG FFTTEDRHLQ RSHRSMSLAH QYFAIKASNL 180 NIGPCMSFNF IAELLGGYEN VGATKIDFKN TSRDIYSYIG KYDAEMIIDK FTLCKATPET 240 HADASIPAKG EIPVCRMQLF PVPRKKSQWG LLFHHNPNLG TYVDKNITHQ HARANILSDR 300 ELAETLQQGH RLLLEFTKGR EREGASITAH PATKSVIPVC VKGEDPVFVP LSAEPDITFF 360 ASRNPYPGAD ISESVTHHIS TTPEWRKGGH LDDSIKHTVC PSPTIGTTLS QSEVEYDEET 420 RSVNCVCLHF ERRGLLCRHA FYTLRAYGIN KIPKQYLLRR WKKEAVVLPL LGSSFKANGS 480 AVNAIINHCG YDEEKLGIFL GKLSIYESGL ESSTVAQSSG NKEDSISSMI GIPKPASIDV 540 FPPDIGLNKG GVTGARYKPS NNDVRYKDPK ERGKNLRNCR ICKELTNHDS RNCPNNPGRK 600 VLTAKKAIKK TKRNGKKVKR KSNNANVEHG NELFNVKDEI HILYHCSNNQ FVKLTENNYN 660 YLENLYLVFL LDHPSFQVLL LLSHILLMME IFDNHSHLQI QQYTSFA

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MPNIYQVTIF LILIFLLIPM HIVGVWFTCS TRLVSGIRDK VEIFKVLQFD SVEEAYNAYK  60
DYAAEAGFIV RRGHQTNDGG IVINKEFLCS KEGTKKVQVK EFDSLKDNYG AKAVKRIRSE  120
FRTNCKAKVY VIRSGEKYRV KSFVEEHNHG FFTTEDRHLQ RSHRSMSLAH QYFAIKASNL  180
NIGPCMSFNF IAELLGGYEN VGATKIDFKN TSRDIYSYIG KYDAEMIIDK FTLCKATPET  240
HADASIPAKG EIPVCRMQLF PVPRKKSQWG LLFHHNPNLG TYVDKNITHQ HARANILSDR  300
ELAETLQQGH RLLLEFTKGR EREGASITAH PATKSVIPVC VKGEDPVFVP LSAEPDITFF  360
ASRNPYPGAD ISESVTHHIS TTPEWRKGGH LDDSIKHTVC PSPTIGTTLS QSEVEYDEET  420
RSVNCVCLHF ERRGLLCRHA FYTLRAYGIN KIPKQYLLRR WKKEAVVLPL LGSSFKANGS  480
AVNAIINHCG YDEEKLGIFL GKLSIYESGL ESSTVAQSSG NKEDSISSMI GIPKPASIDV  540
FPPDIGLNKG GVTGARYKPS NNDVRYKDPK ERGKNLRNCR ICKELTNHDS RNCPNNPGRK  600
VLTAKKAIKK TKRNGKKVKR KSNNANVEHG NELFNVKDEI HILYHCSNNQ FVKLTENNYN  660
YLENLYLVFL LDHPSFQVLL LLSHILLMME IFDNHSHLQI QQYTSFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-14	FAR1 family protein