PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008680.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 692aa MW: 77864.8 Da PI: 8.8735

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008680.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.2	8.2e-11	212	289	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +Y +YA+e+GF +rks++k+ r+g ++k+++ ++k +k+ rt++ tgCka+ + +++ + k+++t+++ eHnHe Cse_sc008680.1_g030.1 212 MYMRYASEAGFGIRKSTQKRL-RDG-FVKEKLA--------PKKG--DKQVRTSNFRITGCKARAVFHMMPgSRKYRLTTFDVEHNHE 287 8*************98887.555.3333332........2222..24567888999*********9************** PP FAR1 89 la 90 l Cse_sc008680.1_g030.1 288 LD 289 96 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MDRPLRPADI SLYSWDGGRD VCVDLTGASS LTQSGLLDFV PGRAVSEAAR RKHVKYEAKC 60 ADIGYGFLPF SLSSFRELEK EAVTLLKCIR RFSLTQDIGA RAVGQPPHPP PSSLYNHRHL 120 RHVLHFIPPI FDLNEVPVGE DSIDLDVMSS ICASNVDDNA SSSSGLKTPS SFIHHDFIDT 180 PGGSVFWVPR VSASVLSVLF SVYDSVEDCI SMYMRYASEA GFGIRKSTQK RLRDGFVKEK 240 LAPKKGDKQV RTSNFRITGC KARAVFHMMP GSRKYRLTTF DVEHNHELDR VKAHSLYTGL 300 KGSSALVHGT ETEFNNLVRG INCFIGDSDA QMLINRMEDR MKFTSDFSFD YLVENAELIG 360 LFWADQVAKL NYKEFGDIVS FDATYKTNKY RMVFVPFTAI DNHRRSVTVG SGLLKNETTE 420 SYVWLLQAFK KAFVRSPSII VTDQDGAMRK AIAEIVSRIY DDTDFKNKFH KIVWNMYIGP 480 EEFELRWNEL MVEFGLLNHK WLNKMITSRS ESENSFFSHF TSPTSTLVKF MARYGQNNEE 540 IERLAIVATG LVESCVHMMS NNKGKLTSFV DKLKKLKTEV EADLPTVPSR NVSEIVEEFM 600 GIKKPTKIYV KNPSKASNKG FMRERIKGGR EKSFDKSKKQ KKSCSICGST EPNRATCPDK 660 GKYLTNNAEV GGSSAEGVLV QVEVESSAQP LQ

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MDRPLRPADI SLYSWDGGRD VCVDLTGASS LTQSGLLDFV PGRAVSEAAR RKHVKYEAKC  60
ADIGYGFLPF SLSSFRELEK EAVTLLKCIR RFSLTQDIGA RAVGQPPHPP PSSLYNHRHL  120
RHVLHFIPPI FDLNEVPVGE DSIDLDVMSS ICASNVDDNA SSSSGLKTPS SFIHHDFIDT  180
PGGSVFWVPR VSASVLSVLF SVYDSVEDCI SMYMRYASEA GFGIRKSTQK RLRDGFVKEK  240
LAPKKGDKQV RTSNFRITGC KARAVFHMMP GSRKYRLTTF DVEHNHELDR VKAHSLYTGL  300
KGSSALVHGT ETEFNNLVRG INCFIGDSDA QMLINRMEDR MKFTSDFSFD YLVENAELIG  360
LFWADQVAKL NYKEFGDIVS FDATYKTNKY RMVFVPFTAI DNHRRSVTVG SGLLKNETTE  420
SYVWLLQAFK KAFVRSPSII VTDQDGAMRK AIAEIVSRIY DDTDFKNKFH KIVWNMYIGP  480
EEFELRWNEL MVEFGLLNHK WLNKMITSRS ESENSFFSHF TSPTSTLVKF MARYGQNNEE  540
IERLAIVATG LVESCVHMMS NNKGKLTSFV DKLKKLKTEV EADLPTVPSR NVSEIVEEFM  600
GIKKPTKIYV KNPSKASNKG FMRERIKGGR EKSFDKSKKQ KKSCSICGST EPNRATCPDK  660
GKYLTNNAEV GGSSAEGVLV QVEVESSAQP LQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	571	576	DKLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	1e-28	FAR1 family protein