PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008467.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 29392.1 Da PI: 7.6852 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.7 | 2.2e-14 | 98 | 199 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkek. 72 ++Y+ YA + F vrks skk ng++t++ Cs+ gk+++ ++ ++k++r++++t t+Cka++ k + Cse_sc008467.1_g020.1 98 NMYKVYAAKGRFGVRKSGSKKW--NGQVTHKYVICSRGGKPRKMAETntlnedvqengnvdgKTKRKRRSSTTLTDCKARICFKVIEg 183 58***************99988..999***************999999************99888899999999************99 PP FAR1 73 dgkwevtkleleHnHe 88 ++ + +++ ++HnH+ Cse_sc008467.1_g020.1 184 TNMYSLYDWTENHNHP 199 ***************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MVDIVDIVQD SNTNPIREDD ILLHELNDQP IFLPEQDLIM ENAHHDQDDS NEANVDVYDL 60 DPEFIPTPNG SSYWVPNIPL DENPKKGALF HTYEEAINMY KVYAAKGRFG VRKSGSKKWN 120 GQVTHKYVIC SRGGKPRKMA ETNTLNEDVQ ENGNVDGKTK RKRRSSTTLT DCKARICFKV 180 IEGTNMYSLY DWTENHNHPP IVQSNMNLSR ARRKLRYGDY MFIHRASLTS IRVQKAHRLR 240 VALLGGFDQV RGMPVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 216 | RARRKLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 7e-07 | FAR1 family protein |