PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008443.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 456aa    MW: 51281.1 Da    PI: 6.7828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008443.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.21.6e-138434531374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lLl+cA++v+sg++e a+ +L ++s+lasp+gd+mqR+a+yf+eALa+r++++++++ykal++++ s    se++ ++k+f+e +
  Cse_sc008443.1_g040.1  43 LIHLLLTCAKHVASGNFEHANIALDQISHLASPEGDTMQRIASYFAEALANRILKTWPGIYKALHSTRIS--LASENILVRKMFFEYF 128
                            689*************************************************************998887..699************* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P+lk++++++Nq I ea+ege+ vH+iD+++ +++QW aLl+ L++Rpegpp+lRiTgv++    +ke l ++++ L + Ae+l++pf
  Cse_sc008443.1_g040.1 129 PYLKIAFVITNQVIIEAMEGEKIVHVIDLNAAEPTQWRALLRDLSARPEGPPHLRITGVHQ----QKEVLDQMARILIEEAEKLDIPF 212
                            *************************************************************....9********************** PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.............................................desvs 219
                            +fn+ +++++e+l++++L+vk+gEala+++vlq h+ll                                             + s+ 
  Cse_sc008443.1_g040.1 213 QFNP-IVSTIENLDVDKLNVKTGEALAISSVLQFHSLLapddvvvkskknsngvhlqrvlqvnpkdlangyslsqdtasssplS-SAI 298
                            ****.79**********************************************************************9977742.333 PP

                   GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                            ++ +++ +L ++++lsPkv+vvveq++dhn++ ++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+nv+aceg er+e
  Cse_sc008443.1_g040.1 299 TSTKIEGFLTALRGLSPKVMVVVEQDSDHNKSGLMERLSESLYFYAALFDCLESTLPRTSMERLKVEKMLFGEEIKNVIACEGGERKE 386
                            3336899********************************************************************************* PP

                   GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            rhe+l kW +rl+ aGF+ vpls++a  qa++ll+ ++ dg r++ee+g++v++W+drpL+svSaW+
  Cse_sc008443.1_g040.1 387 RHEKLDKWFQRLDLAGFGCVPLSYYALLQARRLLQGYSCDGCRIKEENGCVVMCWQDRPLFSVSAWK 453
                            ******************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    
MFQDDGSSSV TSTPVQMFPS MSMSPSPYPW LKELKSEERG LCLIHLLLTC AKHVASGNFE  60
HANIALDQIS HLASPEGDTM QRIASYFAEA LANRILKTWP GIYKALHSTR ISLASENILV  120
RKMFFEYFPY LKIAFVITNQ VIIEAMEGEK IVHVIDLNAA EPTQWRALLR DLSARPEGPP  180
HLRITGVHQQ KEVLDQMARI LIEEAEKLDI PFQFNPIVST IENLDVDKLN VKTGEALAIS  240
SVLQFHSLLA PDDVVVKSKK NSNGVHLQRV LQVNPKDLAN GYSLSQDTAS SSPLSSAITS  300
TKIEGFLTAL RGLSPKVMVV VEQDSDHNKS GLMERLSESL YFYAALFDCL ESTLPRTSME  360
RLKVEKMLFG EEIKNVIACE GGERKERHEK LDKWFQRLDL AGFGCVPLSY YALLQARRLL  420
QGYSCDGCRI KEENGCVVMC WQDRPLFSVS AWKCRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein