PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008270.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 404aa MW: 44730.8 Da PI: 4.4707

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008270.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.5e-11	222	269	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ + Er+RR+ +++ + Lr+l+P+ + K++Ka+i+ Av++I++Lq Cse_sc008270.1_g030.1 222 TKSLISERKRRSGMKENLYALRTLVPNiS------KMDKASIVGDAVRHIQDLQ 269 555678*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MDSFEYPIGH FNDSNFNILP PDFIPETDFE NLLSAIQCET NPTEIFCLDS ECNHFTNACT 60 PLQLSPQLYE AIDDIGVDID IDNGNGTCNG NDTSIGIYDG MYPNLNDHNE AIDDIGIDFD 120 ISSGSGSATG NANDTGISFY DGMDPNLYDH NDLIDGIGID IDNGADSGIG CYEEMDPNLY 180 LIWDEDDDDA KVSGDGDSSE TVTTRNPNTK RRSGGGVKGD RTKSLISERK RRSGMKENLY 240 ALRTLVPNIS KMDKASIVGD AVRHIQDLQT QARNLRSEIA KIEEANNQKL PSKNSNKTHV 300 SKAPPILKKI SKMDMFNVEE KGYYVKLVCN KGRGVAVALH KALESIKRYQ VQSLNLATVG 360 DTFVLTFTFK VLTTRKLDIN LPNLKLWISG VFLNQGFEFS HRLN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MDSFEYPIGH FNDSNFNILP PDFIPETDFE NLLSAIQCET NPTEIFCLDS ECNHFTNACT  60
PLQLSPQLYE AIDDIGVDID IDNGNGTCNG NDTSIGIYDG MYPNLNDHNE AIDDIGIDFD  120
ISSGSGSATG NANDTGISFY DGMDPNLYDH NDLIDGIGID IDNGADSGIG CYEEMDPNLY  180
LIWDEDDDDA KVSGDGDSSE TVTTRNPNTK RRSGGGVKGD RTKSLISERK RRSGMKENLY  240
ALRTLVPNIS KMDKASIVGD AVRHIQDLQT QARNLRSEIA KIEEANNQKL PSKNSNKTHV  300
SKAPPILKKI SKMDMFNVEE KGYYVKLVCN KGRGVAVALH KALESIKRYQ VQSLNLATVG  360
DTFVLTFTFK VLTTRKLDIN LPNLKLWISG VFLNQGFEFS HRLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	232	KRRSGGGVKGDRTKSLISERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	4e-59	bHLH family protein