PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008209.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 93158.1 Da PI: 5.9738 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 37 | 95 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le++++++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Cse_sc008209.1_g020.1 37 KYVRYTAEQVDALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 95 5678*****************************************************97 PP | |||||||
2 | START | 160 | 1.8e-50 | 174 | 381 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v ++++ ve+l d+ W +++++ e+l + g Cse_sc008209.1_g020.1 174 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRT-SWYRDCRSLEVLTMLPAGn 260 68999*****************************************************9999999999.****************999 PP .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171 g+++l +++ +a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ ++vR+e+lpSg+li+p+++g+s +++v+h + Cse_sc008209.1_g020.1 261 gGTIELVYTQVYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGSGGGPNaasATQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLN 348 9*********************************************999999888889****************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204 l++++++++lr+l++s+ + ++k++ a+l++ + Cse_sc008209.1_g020.1 349 LEAWSVPEVLRPLYESSKVVAQKMTIAALRYIR 381 ****************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence |
MAMVAQHHRE TTTSSSNSSM KQHDSNNNSH HQLDNGKYVR YTAEQVDALE RVYAECPKPS 60 SLRRQQLIRD CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLS AMNKLLMEEN 120 DRLQKQVSQL VYENGYMRQQ LTASTVTDAS CESVVTTPQH SLRDANNPAG LLAIAEETLA 180 EFLSKATGTA VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIVEILKDR 240 TSWYRDCRSL EVLTMLPAGN GGTIELVYTQ VYAPTTLAPA RDFWTLRYTT SLDNGSLVVC 300 ERSLSGSGGG PNAASATQFV RGEMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSVPEVLRP 360 LYESSKVVAQ KMTIAALRYI RQIAQESSGE VVYGLGRQPA VLRTLSQRLS KGFNDAINGF 420 NDDGWSLMNC DGAEDVIVAI NSTKNLTTLN LGGVLCAKAS MLFQNVPPAV LVRFLREHRS 480 EWADFNVDAY SAASVKANPY GFSGMRPTRF TGSQIIMPLG QTIEHEEMLE VIRLEGHALG 540 QEDPFVSRDI HLLQLCSGID ENTVGACSEL IFAPIDEMFP DDAPLIPSGF RIIPLDPKPV 600 KFMFTGDPKD AHRTLDLTSS LEVGSSTNQG SSDALSCPNT RSVLTIAFQF PFENNLADSV 660 ATMARQYVRS VINSVQRVAM AISPSGLSPS VSPKMSPGSP EALTLAQWIC QSYTYHLGTD 720 LLTSGSVVGD SLLKDLWQHQ DAILCCSLKS LPVFIFANQA GLDMLETTLV ALQDITLDKM 780 FDDDGRKALF PEFAKIMQQG FAYLPGGICM STMGRHITYE QAIAWKVLAG DETTVHCLAF 840 SFVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |