PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008114.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 342aa MW: 39052.5 Da PI: 4.581

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008114.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.8e-14	15	61	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT++Ed++l++ + G +W+++++ g+ R++k+c++rw +yl Cse_sc008114.1_g040.1 15 GPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 89***************************99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Cse_sc008114.1_g040.1 71 SENEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 789*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRQPCCDKV GLKQGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SENEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPLTHKPLP PPTPLTNSQP LPSVEPQVHE PPHNKNTPLN EHMKHQYNDI SEVVNETMSN 180 QSSTISEVTK DEHEDSEESN RIEETPQVVD FCTDEVPLIE PHEILLPADI NILPPLSSSS 240 SSSSTSSTYD ISTCNQNFIN EDLYQLSPTF DWCSTSLNST NYDNFEDGLW DDDEFISNLG 300 MLINDEFETD TTIQNDTTFT PDFTQYSRML IDDDSWKFNG FL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRQPCCDKV GLKQGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SENEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLP PPTPLTNSQP LPSVEPQVHE PPHNKNTPLN EHMKHQYNDI SEVVNETMSN  180
QSSTISEVTK DEHEDSEESN RIEETPQVVD FCTDEVPLIE PHEILLPADI NILPPLSSSS  240
SSSSTSSTYD ISTCNQNFIN EDLYQLSPTF DWCSTSLNST NYDNFEDGLW DDDEFISNLG  300
MLINDEFETD TTIQNDTTFT PDFTQYSRML IDDDSWKFNG FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	3e-85	MYB family protein